Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00268 ATGATCACATTATTTCAGCAATTGATCACATTATTCGTTTCTGTTGTGGGTAAATTCTTTGTTGATTTGCTGGTTTCCTTGGCAGATCTAGCTCCAATAATAGATATTGATTTACTTCGTTGGACAGTAAATCGTTTACGTGCTGCGCAAAGTGCGAGTTCAACACAGCAGATCGTCTATTTTGAATCCGGTAATATTGAAATGGGCGAAAATCATCAAGACGCCTCCGATTTGGATTTTTGGGACTCCTTGTTCGATCCCGACGGGGAGGCGTGGATAGAACAACTTTCTGAAAACGATCTGAGCCGGTACGAAAGTTTCCCGTTCCCGGCTTCGAGATCGGCGATTGAGGCACTACCAAATATTTTTACTACGGACGATTCTTCTTATTCTTCTTCTTCTTGGAATTGTGCTGTGTGTATGGAAGACAAGATTGAGGCAAATGAAGGGGCAAAACAGATGCCTTCTTTGAGAATTTCTCACAAGTCCTTCATTTCGAAATCGGAGAACTCATCGGTGAAACTAGAAGATTTCTATGCCAGTCTCTTGCATCAGTGTGTTCAGACCTCCGATTCCCGCCATGGATCGGCAATTCATGCGAAGTTCCTCAAAGGGTTTCTTCCATTTTCTCTTTTCTTCCACAACCATGTACTTAACTTGTATGTCAAATGTGGAAGTCTATCATATGGCCTGCAACTGTTCGACGAAATGCCTGAGAGAAATGTTGTGTCCTGGTCTGCAATCATTGCTGGGTTCGTTCAACATGGCCGACCCAACGAAGCCCTCTCTCTATTTGGCCGCATGCATTGCGATGGCACGATAATGCCCAACGAATTCACCCTTGTAAGTGCCCTCCATGCTTGTTCTTTAATTCAGAGGCTGATATGTTCATACCAAATATACGCATTAATTGTTCGCTTAGGATATGGGTCGAATGTTTTCCTCATGAATGCGTTCTTAACTGCTTTAATTAGGCATGAGAAATTGCTAGAGGCTTTAGAAGTTTTTGAGAGTTGTTCATCCAAAGACACTGTATCTTGGAATGCCATGATGGCTGGTTATTTGCAATTAGCATATTTTGAACTGCCGAAGTTTTGGCACCGGATGAATCTCGAGGGCGTTAAGCCTGATAATTTTACATTTGCTAGTATCTTAACTGGGTTGGCTGCTCTCTCTGAATTTAGGCTGGGGTTGCAAGTTCATGGACAGCTTGTGAAAAGTGGATATGGGAATGATATTTGTGTAGGGAATTCCTTGTGTGATATGTACATTAAGAATCAGAAATTGTTAGATGGTTTTAAAGCTTTTGATGAAATGCCTTCAAGTGATGTGTGCTCTTGGACCCAGATGGCTGCAGGGTGCCTCCAGTGTGGGGAACCAATGAAAGCACTCGAGGTCGTTTACGAGATGAAAAATGTCGGTGTGAGGCTAAATAAGTTCACCCTTGCAACTGCCTTGAATGCTTGTGCCAATTTGGCCTCCATCGAAGAAGGAAAGAAATTCCATGGATTGAGAATTAAACTTGGAACTGATATTGATGTTTGTGTTGATAACGCTTTACTTGATATGTATGCAAAATGTGGATGCATGACCAGTGCAAATGTCGTGTTTCGTTCAATGGATGAACGATCTGTCATCTCGTGGACTACTATGATTATGGGATTTGCACATAATGGCCAAACAAAAGAAGCCCTTCAAATCTTTGATGAAATGAGAAAAGGGGAAGCTGAACCTAACCACATCACTTTTATTTGTGTTCTTTATGCCTGTAGTCAAGGTGGTTTTATTGATGAAGCATGGAAATACTTCTCTTCTATGAGTGCTGACCATGGGATTTCACCTTCAGAAGATCACTATGTGTGCGTGGTGAATCTATTAGGCCGAGCTGGATGTATAAAAGAAGCCGAGGATTTGATCTTACGAATGCCGTTTCGACCTGGTTCATTGGTCTGGCAAACATTGCTTGGTGCTTGCTTAGTTCATGGCGACTTTGAGACGGGAAAACGAGCAGCGGAACACGCGTTGAATTTGAATCGAAACGATCCATCGACTTACATTTTGTTATCAAACATGTTTGCTGGTGGTAGTAACTGGGACGGCGTTGGAAGTTTGAGAGAACTAATGGAAACTAGAGATGTAAAGAAAGTACCTGGATCAAATTTTGCATTAAATAAGTTGTTTGGATTATCTAAAATTAGTCATTTCATTTTTGATGGAATTTTAATTAGATGTGGCATGTGGGATGAGAATATTCGTATCAATATATTGATAGACTCGTTAGGCTCGTATGTGCTCCTCTTAGTAAATGGATGCACCTCAACTCAACTACATAACGACATCAAGCCCACATGTCTTTGGGCCGGGAGAGAAGTTTATATAATCCACCTTTCTCCATCTCTCCTTCTTCTTCTCCTATCGTCAGAGCTTGAGAAAAAATCTTGGTTCAATCTTCAGGTTTCAGTTTTTATCGGAATGTCTTCGTCCGGTGGCAACTCTGGCGACGGAGCTGGCGGTGGCGCCGCCTCCCATGCCCCTCAGCTCTACTTCTGCTATACCTGCAATCGTACGGTAACCATTACTCCCTCATCATCCTCCGATCTTTTGTGCCCCAACTGCAACGATAGCTTCGTTGAAGAAATGGAAAGCCCAAACCCTAACCCTAGTCCCGTTCCCAATCCTTTCCTCTCCTTCACATCCGAGGCATTTCCGCCGTTCAGCACCAGTGGCGGTGGAAATGGCGGTTTCCCCATCATATTCTCTACGACATCATCATCTGGTGGCATTGGCGGTGGCGGTTCTATGATGAATGATCTATCAGCGCTATTGGGAGGCGGTTCTCTTCGATCGTCGTCCTTGCAAGATTCTGACGGTTTTAATCCCTTGCTCTTCCTCCAGAACTATCTTCAAAGCGCTAATGTTCAATTGGTAATCCAAAACGCCTCAGGAGAGGCGTTTCATCCCCCTTCCAATTTCAATCTTGGCGACTACTTCTTCGGCCCCGGCCTCGAGCAGTTGATTCAACAACTTGCTGAAAACGATCCGAACCGTTATGGAACCCCTCCCGCTTCAAAGTCGGCGATTGAGGCACTTCCAGATATCAAGATTACGGAGGAATTGTTGGCCTCGGATTCTTCGCAGTGCGCTGTGTGTAAGGATACATTTGAGCTCAACGAGGTGGCGAAACAGATGCCTTGCAAACACATATATCATGCAGATTGTATAATTCCTTGGTTGGAATTGCATAATTCTTGTCCAGTATGTCGATATGAATTGCCCACAGATGATCCCGATTACGAGCAAAGGACTCGTGGGTCTTCAGCTCCTAATCGAAGTCAAAGCGAAAGTCAACCTTTTGGCGATGCTTCCTCTGGTGGGGAAAATGTTGGTGGAAGCGATCCCAATTCCGACGAGAATTCACAGACTCAACAAATGGCAGAGCGGAGGGTTAGGAGGATAGCTTTTCCTTGGCCCTTCAGAGGTTTTGGTTCAGCCGCTGAGACTAGTAACAGCGGAGGTGGCAACAACAGTGGAAATAGCGACGAACCTAGCTCCAGAAATAGGGGAAGTCAGAGCTCTTCAGAGCCCATGCAGGAAGATCTCGATTGA 3606 44.15 MITLFQQLITLFVSVVGKFFVDLLVSLADLAPIIDIDLLRWTVNRLRAAQSASSTQQIVYFESGNIEMGENHQDASDLDFWDSLFDPDGEAWIEQLSENDLSRYESFPFPASRSAIEALPNIFTTDDSSYSSSSWNCAVCMEDKIEANEGAKQMPSLRISHKSFISKSENSSVKLEDFYASLLHQCVQTSDSRHGSAIHAKFLKGFLPFSLFFHNHVLNLYVKCGSLSYGLQLFDEMPERNVVSWSAIIAGFVQHGRPNEALSLFGRMHCDGTIMPNEFTLVSALHACSLIQRLICSYQIYALIVRLGYGSNVFLMNAFLTALIRHEKLLEALEVFESCSSKDTVSWNAMMAGYLQLAYFELPKFWHRMNLEGVKPDNFTFASILTGLAALSEFRLGLQVHGQLVKSGYGNDICVGNSLCDMYIKNQKLLDGFKAFDEMPSSDVCSWTQMAAGCLQCGEPMKALEVVYEMKNVGVRLNKFTLATALNACANLASIEEGKKFHGLRIKLGTDIDVCVDNALLDMYAKCGCMTSANVVFRSMDERSVISWTTMIMGFAHNGQTKEALQIFDEMRKGEAEPNHITFICVLYACSQGGFIDEAWKYFSSMSADHGISPSEDHYVCVVNLLGRAGCIKEAEDLILRMPFRPGSLVWQTLLGACLVHGDFETGKRAAEHALNLNRNDPSTYILLSNMFAGGSNWDGVGSLRELMETRDVKKVPGSNFALNKLFGLSKISHFIFDGILIRCGMWDENIRINILIDSLGSYVLLLVNGCTSTQLHNDIKPTCLWAGREVYIIHLSPSLLLLLLSSELEKKSWFNLQVSVFIGMSSSGGNSGDGAGGGAASHAPQLYFCYTCNRTVTITPSSSSDLLCPNCNDSFVEEMESPNPNPSPVPNPFLSFTSEAFPPFSTSGGGNGGFPIIFSTTSSSGGIGGGGSMMNDLSALLGGGSLRSSSLQDSDGFNPLLFLQNYLQSANVQLVIQNASGEAFHPPSNFNLGDYFFGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPDIKITEELLASDSSQCAVCKDTFELNEVAKQMPCKHIYHADCIIPWLELHNSCPVCRYELPTDDPDYEQRTRGSSAPNRSQSESQPFGDASSGGENVGGSDPNSDENSQTQQMAERRVRRIAFPWPFRGFGSAAETSNSGGGNNSGNSDEPSSRNRGSQSSSEPMQEDLD 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2266246 2278037 + Lsi02G002680.1 Lsi02g00268 655010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00268 1201 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 162 720 - -
Lsi02g00268 1201 ProSiteProfiles Zinc finger RING-type profile. 1047 1088 IPR001841 -
Lsi02g00268 1201 CDD RING-H2_RNF126_like 1046 1088 - -
Lsi02g00268 1201 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Lsi02g00268 1201 MobiDBLite consensus disorder prediction 1095 1201 - -
Lsi02g00268 1201 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1009 1094 IPR013083 -
Lsi02g00268 1201 Gene3D Tetratricopeptide repeat domain 498 720 IPR011990 GO:0005515
Lsi02g00268 1201 Pfam Ring finger domain 1046 1088 IPR001841 -
Lsi02g00268 1201 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 241 275 IPR002885 -
Lsi02g00268 1201 Gene3D Tetratricopeptide repeat domain 295 391 IPR011990 GO:0005515
Lsi02g00268 1201 Gene3D Tetratricopeptide repeat domain 392 497 IPR011990 GO:0005515
Lsi02g00268 1201 Gene3D Tetratricopeptide repeat domain 142 294 IPR011990 GO:0005515
Lsi02g00268 1201 PANTHER OS07G0578800 PROTEIN-RELATED 162 720 IPR045215 GO:0003723|GO:0009451
Lsi02g00268 1201 SUPERFAMILY RING/U-box 1029 1095 - -
Lsi02g00268 1201 Pfam zinc-ribbon 846 880 IPR039525 GO:0061630
Lsi02g00268 1201 SMART ring_2 1047 1087 IPR001841 -
Lsi02g00268 1201 Pfam E motif 661 719 IPR046848 -
Lsi02g00268 1201 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Lsi02g00268 1201 Pfam PPR repeat 619 642 IPR002885 -
Lsi02g00268 1201 Pfam PPR repeat 446 475 IPR002885 -
Lsi02g00268 1201 Pfam PPR repeat family 240 288 IPR002885 -
Lsi02g00268 1201 Pfam PPR repeat family 544 590 IPR002885 -
Lsi02g00268 1201 MobiDBLite consensus disorder prediction 1102 1146 - -
Lsi02g00268 1201 TIGRFAM PPR: pentatricopeptide repeat domain 243 273 IPR002885 -
Lsi02g00268 1201 TIGRFAM PPR: pentatricopeptide repeat domain 546 579 IPR002885 -
Lsi02g00268 1201 TIGRFAM PPR: pentatricopeptide repeat domain 581 615 IPR002885 -
Lsi02g00268 1201 MobiDBLite consensus disorder prediction 1163 1201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00268 - - - csv:101211489 1089.33
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01640 Lsi-Chr1:14824665 Lsi02g00268 Lsi-Chr2:2266246 1.00E-28 dispersed
Lsi02g00268 Lsi-Chr2:2266246 Lsi11g00060 Lsi-Chr11:691144 8.95E-26 dispersed
Lsi02g02625 Lsi-Chr2:32672392 Lsi02g00268 Lsi-Chr2:2266246 6.04E-25 dispersed
Lsi03g00197 Lsi-Chr3:2583162 Lsi02g00268 Lsi-Chr2:2266246 2.42E-33 dispersed
Lsi03g02121 Lsi-Chr3:32436576 Lsi02g00268 Lsi-Chr2:2266246 1.02E-33 dispersed
Lsi04g00418 Lsi-Chr4:4034742 Lsi02g00268 Lsi-Chr2:2266246 1.26E-23 dispersed
Lsi04g00895 Lsi-Chr4:8938365 Lsi02g00268 Lsi-Chr2:2266246 2.44E-40 dispersed
Lsi04g02380 Lsi-Chr4:30927669 Lsi02g00268 Lsi-Chr2:2266246 3.99E-33 dispersed
Lsi06g00416 Lsi-Chr6:4598995 Lsi02g00268 Lsi-Chr2:2266246 5.49E-27 dispersed
Lsi09g00865 Lsi-Chr9:9994317 Lsi02g00268 Lsi-Chr2:2266246 6.50E-65 dispersed
Lsi10g00911 Lsi-Chr10:13579574 Lsi02g00268 Lsi-Chr2:2266246 9.50E-44 dispersed
Lsi10g01392 Lsi-Chr10:18067125 Lsi02g00268 Lsi-Chr2:2266246 5.13E-36 dispersed
Lsi02g00268 Lsi-Chr2:2266246 Lsi02g02283 Lsi-Chr2:29396406 1.02E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g965 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0364 . Lsi02g00268 Csa01g00746 Chy12g01366 Cme12g01798 . . Bda11g01566 . . . . . . . . . Cma18g00096 . Car18g00085 Cpe09g01095 . Bhi08g01339 . . . Hepe07g2325 . . Cla01g01466 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012247 1 4 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00268 Lsi_Chr02 FPKM 12.335532 12.437819 14.735474 16.818256 14.936394 14.534348 12.497252 19.361984 21.143478 19.431797