Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00271 ATGGGTCGCCAAGCTGTTGCCAAGCTCGTAGGGTCGGCCATTAATCGGAAAACTTCTTCATCTTCATCATCATCTGTGTTTTCGCGGGCGGCGTCGCAGATTAGGCATTACGCGGCTGCTCCGTCGCCTCCACCAGCAGTTTTCGTTGATAAGAACACCCGCGTCATATGTCAAGGGATCACTGGTAAAAACGGCACCTTTCATACAGAGCAGGCCATCGAATATGGCACTAAAATGACTCTGTTTAATGTGTTTGCCTCCATAAATTTCCCGCTTTCCGTCCTTAGAAACGGGAAGGTAGTTGGTGGTGTAACGCCAAAGAAGGGTGGAACAGAACACTTGGGGCTTCCTGTTTTTAACTCAGTTGCTGAAGCCAAAGCTGAAACGAAGGCCAATGCATCAGTTATTTACGTTCCCCCACCATTTGCTGCAGCAGCTATCTTGGAGGCAATGGAAGCTGAGTTAGATCTTGTTGTTTGTATAACGGAAGGGATCCCACAACATGATATGGTGCGAGTTAAGGCTGCTTTAAACAAACAATCTAAAACTAGATTGATTGGCCCCAATTGCCCTGGCATTATCAAGCCTGGAGAATGTAAAATTGGAATCATGCCTGGATACATCCACAAACCTGGCCGCATTGGCATTGTATCACGATCTGGTACCTTGACCTATGAAGCTGTTTTTCAAACAACTGCTGTTGGCCTAGGACAATCCACATGCGTAGGTATTGGAGGGGATCCCTTTAATGGGACAAACTTTGTTGATTGCATTGAGAAGTTCCTTGCCGATCCTCAGACGGAAGGTATTGTTCTAATTGGAGAAATAGGTGGAACTGCTGAAGAGGATGCTGCCGCTTTGATAAAGATTTGTTCAATCTCTCCTTTAATGGAAAGTGGTACTGAGAAGCCTATTGTTGGATTCATTGCTGGCCTAACTGCTCCTCCAGGCCGTCGCATGGGTCATGCTGGTGCCATTGTTTCAGGTGGAAAAGGTACGGCCCAAGACAAAATCAAGACACTACGAGAAGCTGGAGTAACGGTGGTGGAGTCACCTGCAAAAATTGGCGTTTCAATGCTTGATGTTTTCAAACAGAGAGGCCTTGTTAGTTAG 1113 46.45 MGRQAVAKLVGSAINRKTSSSSSSSVFSRAASQIRHYAAAPSPPPAVFVDKNTRVICQGITGKNGTFHTEQAIEYGTKMTLFNVFASINFPLSVLRNGKVVGGVTPKKGGTEHLGLPVFNSVAEAKAETKANASVIYVPPPFAAAAILEAMEAELDLVVCITEGIPQHDMVRVKAALNKQSKTRLIGPNCPGIIKPGECKIGIMPGYIHKPGRIGIVSRSGTLTYEAVFQTTAVGLGQSTCVGIGGDPFNGTNFVDCIEKFLADPQTEGIVLIGEIGGTAEEDAAALIKICSISPLMESGTEKPIVGFIAGLTAPPGRRMGHAGAIVSGGKGTAQDKIKTLREAGVTVVESPAKIGVSMLDVFKQRGLVS 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2295794 2301129 - Lsi02G002710.1 Lsi02g00271 655013

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00271 370 PRINTS Succinyl-CoA synthase signature 274 287 - -
Lsi02g00271 370 PRINTS Succinyl-CoA synthase signature 243 261 - -
Lsi02g00271 370 PRINTS Succinyl-CoA synthase signature 147 164 - -
Lsi02g00271 370 PRINTS Succinyl-CoA synthase signature 315 332 - -
Lsi02g00271 370 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 311 324 IPR017440 -
Lsi02g00271 370 Pfam CoA-ligase 217 346 IPR005811 GO:0003824
Lsi02g00271 370 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 8 80 - -
Lsi02g00271 370 PANTHER SUCCINATE--COA LIGASE [ADP-FORMING] SUBUNIT ALPHA-1, MITOCHONDRIAL 98 369 - -
Lsi02g00271 370 Hamap Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 45 363 IPR005810 GO:0003824
Lsi02g00271 370 TIGRFAM sucCoAalpha: succinate-CoA ligase, alpha subunit 98 361 IPR005810 GO:0003824
Lsi02g00271 370 SMART CoA_binding_2 48 165 IPR003781 -
Lsi02g00271 370 Gene3D - 187 368 IPR016102 -
Lsi02g00271 370 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 188 IPR036291 -
Lsi02g00271 370 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 218 247 IPR033847 -
Lsi02g00271 370 SUPERFAMILY Succinyl-CoA synthetase domains 189 360 IPR016102 -
Lsi02g00271 370 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 8 80 - -
Lsi02g00271 370 PANTHER SUCCINYL-COA LIGASE SUBUNIT ALPHA 98 369 - -
Lsi02g00271 370 Gene3D - 46 186 - -
Lsi02g00271 370 Pfam CoA binding domain 99 164 IPR003781 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00271 K01899 LSC1; succinyl-CoA synthetase alpha subunit [EC:6.2.1.4 6.2.1.5] - csv:101206269 612.068
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00271 Lsi-Chr2:2295794 Lsi08g00837 Lsi-Chr8:16816608 5.82E-19 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g960 . . . . Bpe12g00634 . . . Cmo13g00995 Cmo18g00076 . . . . . Cpe20g00178 . . . . . . . . . . . . . . . . . . . Lsi02g00271 Csa01g00750 Chy12g01362 Cme12g01794 Blo13g00104 . . . . . . Bma08g00126 Sed08g2797 . . Cma13g00961 Cma18g00099 Car13g00797 Car18g00089 Cpe09g01091 . Bhi08g01346 Tan05g2142 Cmetu12g0797 . Hepe07g2322 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011285 1 2 1 1 1 0 2 0 0 1 0 0 1 1 1 2 0 1 2 0 1 1 0 1 1 1 1 2 1 2 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00271 Lsi_Chr02 FPKM 5.199208 6.829282 18.797134 19.472073 12.581251 11.4267 12.973288 10.08772 10.489286 10.526567