Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00275 ATGGAGGAAGAAGGAGTGGATGATCGTGTAGTGAAGCGTTTGGATTCTGAACGGGATCCAAATCAGAAGACCAGGCAGAGATTTGGTGGAGGAGGTGGAGTATTATCGATTGAGGAGTTCTTTGAGGACCAAGAAGTTCCTTCATGGAGGAAGCAGCTGACATTTAGGGCTTTTTTCGTTAGTTTTTGGCTGAGTGTTTTGTTCAGCTTCATTGTAATGAAGCTCAATCTGACCACTGGTATTATTCCTTCACTCAACGTGTCTGCTGGTCTATTAGGTTTCTTCTTTGTTAAGTCGTGGACGAAATTTTTGGAGAGATCAGGCCTCTTGAGGCAGCCTTTCACCAGGCAGGAGAACACCGTCATCCAAACCTGTGTTGTTGCCTCGTCTGGCATTGCTTTCAGCGTATTATTTTCCCCTTGTTGGTTTGTTGTTTTGTTGTGCGTTCTTGGCGCAGATTTTTGTAAACTTCTAAGTTATGGACCAAGATGGTCATTTGACCATGCCTTGGAAGCTCAGCTACTTGTGCTGCAGTTTTTCCTTGGCCTTCCATCTCCATGGCAGGAGCAATCTAACATCCATCTTGCAATTGAAGAAAAACTTTACTCATTTGCCCAGAAGCCTCTTTCAAGAAGTAAACTTCTGTTTGAGACTGAGTACTGTTTCTGGTGTGGGAGAATCCCGGTCATGATCATAGACTTCAAATTAACTTATCCAAGTGGTACTGCAACTGCTCATTTGATTAATAGTTTCCACACTCCCCGAGGAGCTGCACTAGCAAAGAAACAGGTGAGATTGCTCGGCAGGTTTTTCTCTGTGAGCTTCTTGTGGGGCTTTTTTCAATGGTTCTTTACATCTGCAGATGGTTGTGGATTTGCACATTTTCCAACATTTGGGCTCAAAGCATATGCAAACAAGTTTTACTTTGACTTCTCAGCAACATATATTGGAGTAGGGATGATTTGCCCCCACATAATAAATGTATCGGTGCTTGTTGGAGGAATTATCTCATGGGGCATAATGTGGCCTCTCATAGAAGATAAAAAAGGTCAATGGTATAGTGAGAAATTGAGCTCAGATGACCTAAGTGGACTTGAAGGTTATAAGGTATTTATAGCAATAGCTATAATTCTTGGTGATGGCCTATACAACTTCTTCAGAGTATTGACTCGGACCCTCTCCGGCTTGTTTGACCAACTTCAACGCAGAAGAGAGAGTGAAGATTTTTCCATGGAAAGTTCATCAAGGTCTGAGTTATCTTATGATGATGCACGAAGGAAGCAACTTTTTCTCAAGGATCAAATACCAATCTGGTTTGCCATTGGAGGCTATGTTATAATTGCCGTAGTGTCGATGAACACTCTTCCACACATCTTTCACCAGCTAAAGTGGTATTATATTTTGGTCATCTACATCTTTGCTCCTGTCTTGGCCTTCTGTAATGCATATGGATGTGGACTCACAGATTGGTCTCTGGCATCCACTTATGGGAAGCTTGCTATTTTCACAATTGGTGCATGGGCTGGGCCCTTGCATGGGGGAGTTATTGCTGGTCTATCAGCTTGTGGGGTCATGATGAATATTGTCTCTACAGCCTCAGACCTTATGCAGGATTTCAAAACTGGCTATCTAACTTTAGCTTCACCTCGCTCCATGTTTGTCAGCCAAGTTGTAGGCACAACAATGGGCTGCGTTATTTCCCCTTGTGTCTTTTGGCTCTTCTACAAGGCATTTGATGATCTTGGTCTTCCAACTGGTGAATACCCTGCCCCTAACGCAGTTCTTTTTCGCAACATGTCCGTGTTGGGTGTTGAAGGCGTCTCAAGTCTACCAAAGAATTGTCTTACCTTTTGTTATGTGTTTTTTGCCACCGCAATTTTGATTAACTTGATTAAAGACTTGATACCCAAAAAGTGGGCAAGGTTCATTCCCTTACCTATGGCAATGGCCATACCATTCTATATAGGGCCATACTTTGCAATTGATATGAGCCTGGGTAGTCTGATATTGTTTGTGTGGCAGAAGTTAAACAGAACCAAAGCTGAAGCGTTCGGTCCTGCTGTAGCATCTGGTTTGATTTGTGGCGACGGGATTTGGACGTTGCCTAATTCTATTTTGGCTTTGGCTGGAGTCAAGGCACCAATTTGCATGAAGTTCCTTTCAAGGTCAACCAACGCAAAAGTAGATAAGTTCCTTGGATCGTAG 2205 43.04 MEEEGVDDRVVKRLDSERDPNQKTRQRFGGGGGVLSIEEFFEDQEVPSWRKQLTFRAFFVSFWLSVLFSFIVMKLNLTTGIIPSLNVSAGLLGFFFVKSWTKFLERSGLLRQPFTRQENTVIQTCVVASSGIAFSVLFSPCWFVVLLCVLGADFCKLLSYGPRWSFDHALEAQLLVLQFFLGLPSPWQEQSNIHLAIEEKLYSFAQKPLSRSKLLFETEYCFWCGRIPVMIIDFKLTYPSGTATAHLINSFHTPRGAALAKKQVRLLGRFFSVSFLWGFFQWFFTSADGCGFAHFPTFGLKAYANKFYFDFSATYIGVGMICPHIINVSVLVGGIISWGIMWPLIEDKKGQWYSEKLSSDDLSGLEGYKVFIAIAIILGDGLYNFFRVLTRTLSGLFDQLQRRRESEDFSMESSSRSELSYDDARRKQLFLKDQIPIWFAIGGYVIIAVVSMNTLPHIFHQLKWYYILVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGPLHGGVIAGLSACGVMMNIVSTASDLMQDFKTGYLTLASPRSMFVSQVVGTTMGCVISPCVFWLFYKAFDDLGLPTGEYPAPNAVLFRNMSVLGVEGVSSLPKNCLTFCYVFFATAILINLIKDLIPKKWARFIPLPMAMAIPFYIGPYFAIDMSLGSLILFVWQKLNRTKAEAFGPAVASGLICGDGIWTLPNSILALAGVKAPICMKFLSRSTNAKVDKFLGS 734
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2330830 2335543 - Lsi02G002750.1 Lsi02g00275 655017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00275 734 MobiDBLite consensus disorder prediction 1 24 - -
Lsi02g00275 734 Pfam OPT oligopeptide transporter protein 229 706 IPR004813 GO:0035673
Lsi02g00275 734 Pfam OPT oligopeptide transporter protein 52 135 IPR004813 GO:0035673
Lsi02g00275 734 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 20 140 IPR045035 GO:0035673
Lsi02g00275 734 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 229 733 - -
Lsi02g00275 734 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 20 140 - -
Lsi02g00275 734 MobiDBLite consensus disorder prediction 1 27 - -
Lsi02g00275 734 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 229 733 IPR045035 GO:0035673
Lsi02g00275 734 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 229 707 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00275 - - - csv:101211969 1195.65
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00275 Lsi-Chr2:2330830 Lsi03g00442 Lsi-Chr3:4968422 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g956 . . . . . . . . Cmo13g00993 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00275 Csa01g00753 Chy12g01359 Cme12g01791 . . . . . . . . . . . . . . . Cpe09g01089 . . . . . . . . Cla01g01460 Cam01g1527 Cec01g1568 Cco01g1616 Clacu01g1552 Cmu01g1442 Cre01g1364 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001400 2 2 2 3 2 2 3 2 2 3 2 2 3 3 3 3 2 1 3 2 3 2 2 1 2 3 2 6 4 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00275 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0