Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00276 ATGGATCCTCAACCTGAACCAGTCAGCTACATCTGTGGAGATTGTGGAATGGAGAACACTCTGAAGCAGGGTGATGTTATACAGTGCCGAGAGTGTGGTTATCGTATTCTCTACAAGAAGCGCACCCGTCGCACTTTTTCTTGTCTTGATTGGGGAAAGCCATTTCAGGAGAAGTTACAGAAAACAATGCAGTGTGCTCTTGTAAGAAGTAGTAATTTTCAGAAAGTTCTAGACAAAGGAAAGGAGTCGTTAGAATTGAGACTCGAGGAAAACAGTTGTTCCAGAGGAATTAAGGATTCTAAAGTTTCTTCTTTTGCATGGAGGAACTTTTTTGATTACAGATGTGCTGTCATTAGTTTTCTTACAGTCGAATCTGATGGACTCTGGAGAATTGTTGCACTACCACCACAATACCTAGATAGCTTGGATGTGAGCTGTCTGCCTCAAATGAATCAGTCTACAGCTGAGAGAAAATTGGTGCAGAAAGGCCCTGCCTCTAATGGTACATATTCATTTAATTCATTCAGATGTAGAAGCTTGCTGGAGTCAAATAATAAGTTATTCGATAGTAAAGCAATTAAGTCGTCGAATAAATCCTCTGGCAAGTTCTCGTGTAGGAGTTCATGCTCTGGCTCTGCTTTGATGTCGAGTGACTCTAGTGCAATCTCTGACATCCCCGTTGGTGGAGCTAAAATGCAGAGATATGGGAAGAAAAATCCAAGAAAGAAGGCAAAAAAGAAAGAAATAGAATGTAAGAAGATATCTTCTGATTTTGTCTCTGCTGAAACAGAAGTATCATCCAAGGATTCTGCCCATGGAAGTTTTTTGTCTGAAGCTTGTGGCAATAATGATTCAGATTGTAGAGATGGATCTGTTTTGTGTTCGATTGCACAAGGAACTTTTCTGCCAGATTTTAGGGCCAATAAAAATGATTTTAAACGAGATTCTGAGAGGATTATTCAGCCACTTGGAACCACAGATTCAATATCCTCTAATATTGTTGACGGGAATGCATCTGAGGTTTCATCTTCTGCATCAAAGAATTTTAGTGGGTATTATAAAGTTTGTGGATCCAAAAACCAGGCCCTAATCAAAGTACCTGGTTGTACCCATGTCAATGGGGGAGTAAATTCAAGAGAGAGGTTATTTGCTGGCAGCTACAATGATTTTTGCTCCAAGGATTCTTTGGATAATAATTCCCCAGATTCTAACTGTTTTAGTTCAAACGGTAACTCTGATAATTTTAACTTGAAATTAGATGAAAAGAAATGTTTTGGAGTTGATCTGTTGGAAGAAAGAAGTTCACCTTCTAGAGTGAACTATTGTTCTCATAATTCAGTAAGAGATGAAGTAGATGTGAATGCCAAAGTGGAGAAAGCTAATCGTGGTATTCGGGGATGTACTGTTAGTGAAACTTGTTCGGTTTTACCTGGAAAGAAAACTAAACAAAATAAAAAATTGACCGGGAGTTCAAGGATGAATAGATATGGTGGTCTGGGGAGTTCACAAAGGCGTACGGGGAAGGAAAACAGACTTACTGTCTGGCAAAAGGTTCAAAGGAATAATAGTGGTGAATGTTGTGAACAGTTAGACCAAGTAAGTCCTATCAGCAAACATTTTAAAGGCATCTGTAATCCTGTTGTTGGTGTGCAAATGCCAAAGGTCAAGGATAAAAAAACCGGGAACAGAAAACAGTTGAAAGAAAAATTTCCCAGGAGGTTGAAAAGAAAAAATACTTCAGGACAAGAGAAGATCTATCGTCCTACTAGGAACAATTGTGGTAGTAATACTAGTTCAATGGTTTACAAACCACCAAATGGAAGGTTGGATATTCGATCAGTGGGCTTTGACATAAGAAGATCAAGTGGCGATCCAAGATCTCGTTTTCATAATGATACAACTGATAAATGCACGACTTCTGAATCATTTGAAAGTACACAAGTCTGTCTTGATGGATTGGTGTCAAGCAAACTTATCTCCGATGGTTTGAATAGTAAAAAAGTAGAGAATGACTCTGGCTCATCGCCAAGGTCCTGCAACTCCTTAAATCAGTCAAATCTGGTAGAGGTTCAGTCTCCTGTTTACCTTCCTCATCTTTTCTTTCAAGCAACAAAAGGAAGTTCTCTTGCTGAATGCAGCAAGCACAATAACCAATCTAGATCACCCCTTCATAACTGGTTGCCAAGTGGGGCAGAAGGTTCCAGATTGGCCACCTTGGCCAGACCTGATTTTTCATCTCTGAAAGATGCAAGTACGCGACCTACTGAGTTTGGCACTTCAGAAAAATCAATTCAAGAAAGAGTCAATTGCAACATAGTAGATCCTGTTTCTGTTGTAACTGAGGGGATTCAGCATTCTAGAGATGGGAATCATGGTCCTTTAGAACATGAATGTGAGGTGCCGAAGGTGTATGGTTACAATACAGCTGCACTACAGGATCATAGGTGTGAGTTTGATGTGGATGAGCATTTTAATTCCAAATCCTCATGTGAAGATGCATCTAGAATGGAGCAAGCAGTGAATAATGCATGTAGGGCGCAATTGGTATCTGAAGCTATTCAAATGGAAACCGGTAGTCCAATCGCAGAATTCGAAAGATTCCTTCAATTGTCCTCCCCTGTTATCAACCAGAGACCCAAGTTAAGAAGTAGTGAAATTTACCCAAGAAATCCACCAGGTGATGTGATACCATGTAGCAATGAGACCGCCGACATTTCTTTGGGTTGCCTGTGGCAATGGTATGAAAAACATGGCAACTATGGCTTAGAAATAAAAGCCAATGGTCATGAAAATTCAAATGGATTTGGCGCTGATAACTCTGCATTCTGTGCATATTTTGTTCCATTTCTTTCAGCTGTTCAACTATTCAAGAGCCATAAAACTCATGCTCCAACTACAGGTCCTGTGGGATTTGATTCATGTGTAAGCGATATAAAAGTGAAGGAGCCGTCGACTTGTCATCTTCCAATATTTTCAGTCCTTTTTCCTAAGCCCTGTACTGATGATGCAAGTGTTCTGCGGGTTTGTAATCAGTTACATGGTTCAGAGCAACATTTGGGTTCTGAGAGGAGCAAATCTTCAGAACAATCTGTCAACTTAAAATCATCTGGAGAATCAGAACTTATTTTTGAATATTTTGAAGGGGAACAACCTCAGCAGAGAAGGCCGTTATTTGATAAGATACATCAACTGGTTGAGGGAGATGGACGTCCACAGGGAAAAATTTATGGGGATCCGACCATGCTCAATTCCATAACTTTGAATGATCTGCATGCTGGATCATGGTACTCAGTGGCATGGTATCCCATTTATAGGATACCAGATGGCAACCTTCGAGCTGCATTTTTGACTTACCACTCACTAGGACATTTTGTTTCAAGAACTTCCCAACCTAACTCTCCAGATACAAATTCTTGTTTAGTTTGTCCAGTCGTGGGTCTTCAAAGTTATAATGCACAGAATGAATGCTGGTTTGAGCCTAGAAACAGTACGCCCACGTTAACCCCTGGCTTGAGTCCTCCTAGAATCCTCGAGGAGCGCCTGAGGACGCTGGAAGAGACTGCATCTCTCATGGCCAGAGCTGTGGTTAAGAAAGGAAATCTGAACTCTGAAAACACGCATCCAGATTACGAGTTCTTCCTCTCACGGCGACTCTAG 3657 40.61 MDPQPEPVSYICGDCGMENTLKQGDVIQCRECGYRILYKKRTRRTFSCLDWGKPFQEKLQKTMQCALVRSSNFQKVLDKGKESLELRLEENSCSRGIKDSKVSSFAWRNFFDYRCAVISFLTVESDGLWRIVALPPQYLDSLDVSCLPQMNQSTAERKLVQKGPASNGTYSFNSFRCRSLLESNNKLFDSKAIKSSNKSSGKFSCRSSCSGSALMSSDSSAISDIPVGGAKMQRYGKKNPRKKAKKKEIECKKISSDFVSAETEVSSKDSAHGSFLSEACGNNDSDCRDGSVLCSIAQGTFLPDFRANKNDFKRDSERIIQPLGTTDSISSNIVDGNASEVSSSASKNFSGYYKVCGSKNQALIKVPGCTHVNGGVNSRERLFAGSYNDFCSKDSLDNNSPDSNCFSSNGNSDNFNLKLDEKKCFGVDLLEERSSPSRVNYCSHNSVRDEVDVNAKVEKANRGIRGCTVSETCSVLPGKKTKQNKKLTGSSRMNRYGGLGSSQRRTGKENRLTVWQKVQRNNSGECCEQLDQVSPISKHFKGICNPVVGVQMPKVKDKKTGNRKQLKEKFPRRLKRKNTSGQEKIYRPTRNNCGSNTSSMVYKPPNGRLDIRSVGFDIRRSSGDPRSRFHNDTTDKCTTSESFESTQVCLDGLVSSKLISDGLNSKKVENDSGSSPRSCNSLNQSNLVEVQSPVYLPHLFFQATKGSSLAECSKHNNQSRSPLHNWLPSGAEGSRLATLARPDFSSLKDASTRPTEFGTSEKSIQERVNCNIVDPVSVVTEGIQHSRDGNHGPLEHECEVPKVYGYNTAALQDHRCEFDVDEHFNSKSSCEDASRMEQAVNNACRAQLVSEAIQMETGSPIAEFERFLQLSSPVINQRPKLRSSEIYPRNPPGDVIPCSNETADISLGCLWQWYEKHGNYGLEIKANGHENSNGFGADNSAFCAYFVPFLSAVQLFKSHKTHAPTTGPVGFDSCVSDIKVKEPSTCHLPIFSVLFPKPCTDDASVLRVCNQLHGSEQHLGSERSKSSEQSVNLKSSGESELIFEYFEGEQPQQRRPLFDKIHQLVEGDGRPQGKIYGDPTMLNSITLNDLHAGSWYSVAWYPIYRIPDGNLRAAFLTYHSLGHFVSRTSQPNSPDTNSCLVCPVVGLQSYNAQNECWFEPRNSTPTLTPGLSPPRILEERLRTLEETASLMARAVVKKGNLNSENTHPDYEFFLSRRL 1218
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2340063 2354580 - Lsi02G002760.1 Lsi02g00276 655018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00276 1218 MobiDBLite consensus disorder prediction 480 508 - -
Lsi02g00276 1218 MobiDBLite consensus disorder prediction 585 606 - -
Lsi02g00276 1218 Gene3D RNA polymerase ii, chain L 1 48 - -
Lsi02g00276 1218 Pfam DNA directed RNA polymerase, 7 kDa subunit 10 41 IPR006591 GO:0003677|GO:0003899|GO:0006351
Lsi02g00276 1218 MobiDBLite consensus disorder prediction 585 603 - -
Lsi02g00276 1218 PANTHER DUF789 FAMILY PROTEIN 63 1217 - -
Lsi02g00276 1218 SMART rpolcxc3 8 49 IPR006591 GO:0003677|GO:0003899|GO:0006351
Lsi02g00276 1218 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 63 1217 - -
Lsi02g00276 1218 Pfam Protein of unknown function (DUF789) 862 1213 IPR008507 -
Lsi02g00276 1218 SUPERFAMILY RNA polymerase subunits 7 45 IPR029040 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00276 - - - csv:101212209 1781.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00276 Lsi-Chr2:2340063 Lsi09g00622 Lsi-Chr9:6862254 4.79E-13 dispersed
Lsi02g00276 Lsi-Chr2:2340063 Lsi06g01316 Lsi-Chr6:23739356 3.17E-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g952 . . . . . . . . . Cmo18g00079 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00276 Csa01g00754 . Cme12g01789 . . . . . . . . . . . . Cma18g00102 . Car18g00092 Cpe09g01088 . Bhi08g01351 Tan05g2137 . . . . . Cla01g01459 Cam01g1526 Cec01g1567 Cco01g1614 Clacu01g1550 Cmu01g1440 Cre01g1362 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008692 0 4 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00276 Lsi_Chr02 FPKM 3.274249 4.877469 6.903224 6.284008 27.258381 24.455379 27.085445 6.407819 6.340088 7.513594