Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00279 ATGAAGAGCTTCGGAATATTACTGTCTTTTCTTTTCATTCTCCTTGCCTCTACCGAGGTTCGCTTCTCCAGAGCCGAAGCTTCGCCGGAGGCCGTCCGCGATATCGACGGCAATAAGCTCCGAGCCGGTGTCAACTATTACATCCTCCCTGTTTTCCGCGGCAGAGGCGGCGGCCTAACCCTAGGCAACCTCCAATCGGAGAAATGTCCACTGAACGTGGTTCAAGAACAATTCGAATTAATGAACGGCTTGCCTACAACATTTGCGCCTGTAAACCCTAAAAAAGGAGTGATTCGAGTTTCGACGGATTTGAATGTGCAATTCGAGGCGAGTACGATCTGCGCCACATCGACGGTGTGGAAATTGGACAAATTCGACGAATCGACTGGACAATGGTTCGTGACGATCGGCGGAAGCAGAGGAAATCCAGGGGTGGAGACGGTGGATAATTGGTTCAAAATTGAGAAGGACGGTAAGGATTATAAGTTGGTGTTCTGTCCGAGTGTATGCGATTTCTGTAAAGTGATGTGCAGAGATATTGGAATCTTCTTCAAGAATGGAAAGAGGGCTTTGGCTTTGAGCGATACGCCATTCCCTGTTATGTTCAAGAAAGTTTAA 618 47.9 MKSFGILLSFLFILLASTEVRFSRAEASPEAVRDIDGNKLRAGVNYYILPVFRGRGGGLTLGNLQSEKCPLNVVQEQFELMNGLPTTFAPVNPKKGVIRVSTDLNVQFEASTICATSTVWKLDKFDESTGQWFVTIGGSRGNPGVETVDNWFKIEKDGKDYKLVFCPSVCDFCKVMCRDIGIFFKNGKRALALSDTPFPVMFKKV 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2360483 2361100 - Lsi02G002790.1 Lsi02g00279 655021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00279 205 CDD STI 31 204 IPR002160 GO:0004866
Lsi02g00279 205 Gene3D - 26 205 - -
Lsi02g00279 205 SUPERFAMILY STI-like 28 205 IPR011065 -
Lsi02g00279 205 Pfam Trypsin and protease inhibitor 32 204 IPR002160 GO:0004866
Lsi02g00279 205 PANTHER KUNITZ TRYPSIN INHIBITOR 2 8 205 - -
Lsi02g00279 205 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 32 48 IPR002160 GO:0004866
Lsi02g00279 205 PANTHER KUNITZ TRYPSIN INHIBITOR 2 8 205 IPR002160 GO:0004866
Lsi02g00279 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 31 60 IPR002160 GO:0004866
Lsi02g00279 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 69 89 IPR002160 GO:0004866
Lsi02g00279 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 174 203 IPR002160 GO:0004866
Lsi02g00279 205 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 151 170 IPR002160 GO:0004866
Lsi02g00279 205 SMART kul_2 31 205 IPR002160 GO:0004866
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00279 - - - csv:101207401 360.918
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00279 Lsi-Chr2:2360483 Lsi02g00281 Lsi-Chr2:2370976 9.87E-84 dispersed
Lsi02g00279 Lsi-Chr2:2360483 Lsi02g00280 Lsi-Chr2:2365341 1.48E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00279 . . . . . . . . . . . . . . . . . . . . Bhi08g01359 . . Lac10g0332 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00279 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 2.85774 0.0 0.0 0.0 0.0 0.0