Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00280 ATGAAGAAATTTGCACTACTCTCTTTTCTTTTCATTGCCATTATCATTACCTCATCTGAGGTACGCTTCTGCAGAGCCGACGCCTCGCCGGACTCCGTCCTCGACACCGACGGAAAGAAGCTCCGAGCCGGTGCCAACTACTACATTCTCCCAGCATTTCGAGGCAGCGGTGGCGGCGGATTAGCCACCGGCAATATCCGACAAGGATACGACAGTTGCCGTATCAACGTCGTCCAAGAACCGTACGAACAATCCGACGGTTTTCCGGCGACATTTGCACCTATAAACCCTAAAAAGGGCGTGGTTCGAGTTTCCACTGATTTGAATATCGAATTCGATGCAAGTACGAGGTGCGGAAAATCGACGGTGTGGAAATTAGGAAAATTCGATGAATATTTGAAGCAATATTTCGTGACGATTGGCGGAATGAAAGGGAATCCAGGGCGAGAGACGGTGGAAAATTGGTTCAAAATTGAGAAGTATGGCAATGATTATAAATTGGTGTATTGTCCAACAGTTTGTAAGTATTGCAAAGTAATGTGCAAAGATATTGGTATATTTGAGAACAATGGGAAAAGGGCTCTTGTTTTGAGCGATACGCCATTCCCTGTTATGTTCAAGAAAGCTTGA 630 45.4 MKKFALLSFLFIAIIITSSEVRFCRADASPDSVLDTDGKKLRAGANYYILPAFRGSGGGGLATGNIRQGYDSCRINVVQEPYEQSDGFPATFAPINPKKGVVRVSTDLNIEFDASTRCGKSTVWKLGKFDEYLKQYFVTIGGMKGNPGRETVENWFKIEKYGNDYKLVYCPTVCKYCKVMCKDIGIFENNGKRALVLSDTPFPVMFKKA 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2365341 2365970 - Lsi02G002800.1 Lsi02g00280 655022

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00280 209 CDD STI 33 208 IPR002160 GO:0004866
Lsi02g00280 209 Pfam Trypsin and protease inhibitor 33 208 IPR002160 GO:0004866
Lsi02g00280 209 SUPERFAMILY STI-like 29 209 IPR011065 -
Lsi02g00280 209 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 33 49 IPR002160 GO:0004866
Lsi02g00280 209 PANTHER KUNITZ TRYPSIN INHIBITOR 2 4 209 - -
Lsi02g00280 209 SMART kul_2 32 209 IPR002160 GO:0004866
Lsi02g00280 209 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 178 207 IPR002160 GO:0004866
Lsi02g00280 209 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 73 93 IPR002160 GO:0004866
Lsi02g00280 209 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 32 61 IPR002160 GO:0004866
Lsi02g00280 209 PRINTS Soybean trypsin inhibitor (Kunitz-type) signature 155 174 IPR002160 GO:0004866
Lsi02g00280 209 PANTHER KUNITZ TRYPSIN INHIBITOR 2 4 209 IPR002160 GO:0004866
Lsi02g00280 209 Gene3D - 27 209 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00280 - - - cmo:103482604 356.295
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00280 Lsi-Chr2:2365341 Lsi11g00522 Lsi-Chr11:5497447 1.38E-21 dispersed
Lsi02g00279 Lsi-Chr2:2360483 Lsi02g00280 Lsi-Chr2:2365341 1.48E-97 tandem
Lsi02g00280 Lsi-Chr2:2365341 Lsi02g00281 Lsi-Chr2:2370976 1.93E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00280 . . . . . . . . . . . Sed08g2588 . . . . . . . . Bhi08g01360 Tan05g2129 Cmetu12g1923 Lac10g0333 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002445 5 4 0 5 2 1 1 1 1 1 1 1 1 3 3 0 1 2 1 1 1 2 1 3 8 2 1 1 1 6 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00280 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 0.804907 1.066443 1.135775 0.0 0.0 0.0