Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00281 ATGAGAAAGTTTTTGGGCAAACATTTAGCACAAATAGCCTTTTGGGCCTCCAACGGTCAAGAAAGCAAAGGAAAAAAGAAAATGGAAAAAATGGGGCACTCAAATCATCGAAGGCAAAATTTCCCTCCCATCAGTGATTCACTACCGCCCCTTTTTTCAGCAGCTCCGCATATGCTTGTGGCTCAAAGATGCCAAACAATTGTAAAGTTCTTTACTTGCTTGACTTCCTCAATGAGACTGCTTAGAATGAGAAAAAAGTTGTCCACCTTTCACAATGTATCCTGCCAGGTGTCGGTTATGACAAAAAGAAAGTTTTTGGACAAACATCTAGCACAGATAGTATATATCATTCCAGAAGCTGTGAATATTGATAAAGTGATGATTCATGACAAGAAGACATTATGCATGAAACCAGAAATGCTAATCAATCTTCAGTTAGATATTGTAAAAGGTCACTCCGAGCATTCTGATTTTCTGGCATTACATAAAATTTTCGCTTCAAGGGTATCAAAATACTTTGTCATGCATCCAGAGAAAAGTGAAGTTCCAGAGGAGACATTACCAGAGCCCTTCAACCGGAGAAAAATGTTCTCTCTTGATCAATTGTCTGATAATTCTTCAGAAAGATCTCAGCCAATTTCCATAGAAACTGATTTGTCTTTGGAAGAACTTTGTCCACATTCATCCTTCAAGAGACATTTCTCTAAGAAAGCGGTTTCTAGCTCGGAGATATCGGAATCGGTTACATCTTCTATTGTTGATTTGCCATTCATTCCAGCTTGTAGCCTGAAAGAAGAGGATATTAATGATAAGTTGCTTGAAGATATTCCCACACAGTCAATCTCTCCTCAAGCTGCTGCTGTTAATTCTTTTGAGAGTCCTCATGTCAAGCCTATACTACCTTCTCCTTCTGCTTCTAGCAGCATAATGACACAAACCCCAGTACAGTTGACGCCAAAGAGATCGATGCTGCCGAATTCCAACGTGAAAACAGGGAAACCCGCAAGTGTAGGAAGTGTGTGTAAACCTGCAAAAAGGTTTCTCAACTTTTCTGGCATAGAAGGTGATAATGGCGAGTCGAGTCTCGGTTTGGATGATTTGCAAAGCTATGAAATCCCTGAAAAGAAAAACTTTGTTGATGAGCATTTCCAAAAGAAGAATTATACTAGTGGAGTAATTTATCAAGAATCATCTTCTTGCTTGCCTGAACTTGTTCGTGTTGTCAACAACATTTTCAAGTATGTGAATTGCTCTTCAATAACCAAGGAGGAGCTCGTGCACAAGATTATAATGAATAGTCTTGATATTACTGAGAGAAGTATGCATGGAGAAGTGGAAGAGCAAATTGAGCAGCTGGAAAAGTTGGTTCCGAATTGGATCTCCAAGAAATTGACAACTAGTGGGGATGTTACTTTTAGATCGAAGAGGCTGAGTACAGGGAAAGAATTTAGAAGTCTTGTGAAAATTTTGAGACCTTACCTCTCAAAGCATGGGCGGGTATGGAGGAAGGAGCTAGGACTAATGCTTACATTTATTTATTTGGAACTGGCAAATGTAACCAGAGTCAGATATAGCAAGCTTTGTAAGTTTCCATTAATGGCTGCCATGACCATTCAGAAATCCCCTCTGACTTCTTTTGATGCCCCTCCATGGAAATATGATGTCTTTTTGAGCTTTAGAGGAAAAGACACCCGCAATAGTTTTGTCAGCCATCTTTATGATGCTTTGTGTCAGAAAGGGATTAACACATTCATGGATGACGACATTCAAAGGGGCGAAAACATATTTTCTATGCTCGATAATGTCATTGATGAATCGAGGATTTCAATTGTTGTGCTTTCTAAGAACTATGCATCATCCACAAGCTGTTTAGATGAGTTGGTTAGGATCTTGGATTGCAGAAAATCAAAGCGACAAACGGTGTTGCCGCTCTTCTATAATGTTAGTCCATCAGAAGTAAGGAGCTCGACCGGGACATTTGGAAAGGCTTTGGTTAAACATGAAAACATATCTTCTAATGGAATGGACAGAGTGCAAAGGTGGAGAACAGCCCTGACTGAAATTTCAACTCTGTCCGGTTGGCATTTGCTAAATAGGTCTGAGTCCAAGTTTCTCCAGGATATTGTAAAAGAAACTTTAAAGAAATTGAACCGTACATTTCTATATATTGCTAAGTATCCAGTTGGATTAGAATCTCGCATTCAAGAATTGTATATGTTATTAGATATGAGGTTGGAAGAAGTCCGCATGATTGGGATCTGTGGGATTGGTGGAATAGGCAAGACAACAATTGCTAAAGCCGTTTATAATCTAACGGCAGATCAGTTTGAAACTTGCATCTTTTTAGCAAATGTTAGAGAATATTCCAAGCAAAAACTTGGCCTAGTTCAGTTACAAGAAGCTCTTCTATACGAGGTACTTGGGCACGACAATGTAAAATTGGGAAGCATTGATAAAGGAATTAATGTGATAAAAAACAGGCTTCAAAACAAAAGGGTCCTTTTCGTTCTTGATGATGTGGACCAAACCGAGCAGTTGGAAGCGTTAGCCGGTGGCCAAGATTGGTTTGGTTCAGGAAGTAGAATAATCATTACCACAAGAGATGTTCATTTATTAGTTTCCCATGGAGTTCAATACACATATAAAGTCAAGGAATTGAGTAATGAAGATTCTCTTAAGCTTTTTAGCTGGCATGCCTTCAGGAATCCCTGTCCTAAAAAAGGGTACAAGGAGTTCATTTCCTTTGCTTTGAATTATGCTAAAGGCCTTCCACTTGCCTTAATGGTATTGGGCTCATTTCTCTGTGGTAGAACAATGTTGGAACGGAAAAGTGCTTTGGATAAGTTGAGAAGAATCCCTGATAAAAGAATATATGAAGTGCTGAAAATTAGTTTTGATGGCTTGGAGGACAATGAACAGGCAATTTTTCTGGATATTGCATGTTTCTTTAAGGGGGAAAACAAAGATTATGTTATAGATGTATTAGATGGTTGTGACTTTTATGCTGATAATGGAATTAGAATACTCGTCGATAAGTGTCTCGTAACAATCGAGTACAACAAGCTCTGGATGCATGACTTGCTCCAAGAGTTGGGTTGGGAGATTGTTCGTCAAGAATCCCCGAGATTCCCGGGTCAACGTAGCCGGCTGTGCTTTGAAGAGGATGTTTCACATGTACTTTCTGAAAATATGGGGACCAATAATATTGAAGGCATAAAATTAGATTTGCCAGAGGGAAATGAAGTGTGCATAAGTGGAGAAGCCTTTGCACAAATGAGAAGGCTCAGAATACTAATGATCCACAATGTCCATCTATCTGGAAACCTTGAATATTTTCCTACTGAATTAAGGTTACTGAAATGGTCTAGATATCCTTTTATCTGTTTGCCGTCCAACTTCCATCCCAAGAAACTAGTTTTTAACAACTTAAAAATTGTGGATCTTAGCTTCTGCAAGTTTCTAGTTGAAATCCCTGATTTTTCAGGGATCCCAAATGTTGAGACATTAGACTTCAATCACTGTACAAGTTTAATAGAGGTTCATGAATCAGTTGGTTTGCTTCAAAAGCTTTCTACTTTAAGTCTTTTGTCCTGCTCTAGCCTTCAGAGACTTCCAACTAGAATCAAATTGGAATCCCTGGAGAATCTTTTTCTTTCTGATTGCTCAAAGTTGGAGGCTTTTCCCAGAATTCTAAAGAAAATGAAGTATATTGAAAGTATACATTTAGAAGAGTGTGCTATTACAGAGCTTCCTTTATCAATCAACAATCTCATTGGACTTAAAGCTTTGAACTTAGGACGTTGCAAAAATCTGGAGGTTCTTCCAAGTAGCATTGGTGAATTGCGGCAACTGCAACTTTTGAATCTTACGAGTTGCTCGAAACTCCGAGAACTTCCGAAGCTTCCATCTAGTCTGTTATATCTATGTGCAGATGATTGTAAATCACTGGAAAGTTGCTTACAATTGTCAAAACTGATTATGAATCCATTGAGATTAGCATTATCCTTCATCAATTGCCAAATTTTGGTTGACACTCTGAGTACTGATGTGGTGAAGTTCTTATTCAATGAGAAAGTTCATCAATTCCTCTTCAGATTGCTTCAAGTTTATATGGGAAGCCTGCAACTTGGACCTAAGGACAATGATGAAGCAACTGAGGAGTTTTCATGTCGAGTTGTCGTCTCGATCGATCGCCAGAAAACTATATGTATTGAAAGAGTTTTTAGTTCATTGGAATCAGATCATATATGGATCATGAGCTTCTCCCCTGGTCCAATGACATGGATCTTGAATGGCAAGCCTTGGACCAGATTCGATGTGTCGTTTTCGATTACTAGAGTATTGGAAAATGTTGCAGCAACCAAGGTGATGTTGAAGAAATGTGGATTCCATCATAAATACAGGCGAGATGGTAACTTGAATAATGGCTCACAATTGGTACGTTTCTGCAAAGCCAACGCCTCGCCGGACGCCGTCCTCGACACCGATGGAAAGAAGCTCAAAGCGGGCGATCAATACTACATCCTCTCAGTTTACAGCAGAAACAGCGGCGGATTAAGCATCGGCAGTATCCGACAAGAATACGAAAAATGTCCAGTCAACATCCTCCCAGAATCTTACGAATATTTACACGGTCTTCCGGCGATATTTTCCCCCATAAACCCTAAAAAAGGCGTGGTCCGAGTTTCCACCGATTTGAACATCCAATTCGAGGCGAATACGAGATGCGGAATATCGACGGTGTGGAGAATAGGTAAAATGGATCAATATTTAAAGAAGTTTTTCGTGACGATCGGCGGAATGAAAGGGAATCCAGGGCGGGAGACGGTGGAAAATTGGTTCAAAATTGAAAAGTATGGCAATAATTACAAGTTGGTGTATTGTCCAACAGTGTGTAAATACTGCAAAGTAATGTGCAAAGATGTGGGAATATTCTATAAGAATGGAAAGAGGGCTCTTGCTTTGAATGATGCTCCATTCCCCGTTATGTTCAAGAAAGTTTGA 5004 39.37 MRKFLGKHLAQIAFWASNGQESKGKKKMEKMGHSNHRRQNFPPISDSLPPLFSAAPHMLVAQRCQTIVKFFTCLTSSMRLLRMRKKLSTFHNVSCQVSVMTKRKFLDKHLAQIVYIIPEAVNIDKVMIHDKKTLCMKPEMLINLQLDIVKGHSEHSDFLALHKIFASRVSKYFVMHPEKSEVPEETLPEPFNRRKMFSLDQLSDNSSERSQPISIETDLSLEELCPHSSFKRHFSKKAVSSSEISESVTSSIVDLPFIPACSLKEEDINDKLLEDIPTQSISPQAAAVNSFESPHVKPILPSPSASSSIMTQTPVQLTPKRSMLPNSNVKTGKPASVGSVCKPAKRFLNFSGIEGDNGESSLGLDDLQSYEIPEKKNFVDEHFQKKNYTSGVIYQESSSCLPELVRVVNNIFKYVNCSSITKEELVHKIIMNSLDITERSMHGEVEEQIEQLEKLVPNWISKKLTTSGDVTFRSKRLSTGKEFRSLVKILRPYLSKHGRVWRKELGLMLTFIYLELANVTRVRYSKLCKFPLMAAMTIQKSPLTSFDAPPWKYDVFLSFRGKDTRNSFVSHLYDALCQKGINTFMDDDIQRGENIFSMLDNVIDESRISIVVLSKNYASSTSCLDELVRILDCRKSKRQTVLPLFYNVSPSEVRSSTGTFGKALVKHENISSNGMDRVQRWRTALTEISTLSGWHLLNRSESKFLQDIVKETLKKLNRTFLYIAKYPVGLESRIQELYMLLDMRLEEVRMIGICGIGGIGKTTIAKAVYNLTADQFETCIFLANVREYSKQKLGLVQLQEALLYEVLGHDNVKLGSIDKGINVIKNRLQNKRVLFVLDDVDQTEQLEALAGGQDWFGSGSRIIITTRDVHLLVSHGVQYTYKVKELSNEDSLKLFSWHAFRNPCPKKGYKEFISFALNYAKGLPLALMVLGSFLCGRTMLERKSALDKLRRIPDKRIYEVLKISFDGLEDNEQAIFLDIACFFKGENKDYVIDVLDGCDFYADNGIRILVDKCLVTIEYNKLWMHDLLQELGWEIVRQESPRFPGQRSRLCFEEDVSHVLSENMGTNNIEGIKLDLPEGNEVCISGEAFAQMRRLRILMIHNVHLSGNLEYFPTELRLLKWSRYPFICLPSNFHPKKLVFNNLKIVDLSFCKFLVEIPDFSGIPNVETLDFNHCTSLIEVHESVGLLQKLSTLSLLSCSSLQRLPTRIKLESLENLFLSDCSKLEAFPRILKKMKYIESIHLEECAITELPLSINNLIGLKALNLGRCKNLEVLPSSIGELRQLQLLNLTSCSKLRELPKLPSSLLYLCADDCKSLESCLQLSKLIMNPLRLALSFINCQILVDTLSTDVVKFLFNEKVHQFLFRLLQVYMGSLQLGPKDNDEATEEFSCRVVVSIDRQKTICIERVFSSLESDHIWIMSFSPGPMTWILNGKPWTRFDVSFSITRVLENVAATKVMLKKCGFHHKYRRDGNLNNGSQLVRFCKANASPDAVLDTDGKKLKAGDQYYILSVYSRNSGGLSIGSIRQEYEKCPVNILPESYEYLHGLPAIFSPINPKKGVVRVSTDLNIQFEANTRCGISTVWRIGKMDQYLKKFFVTIGGMKGNPGRETVENWFKIEKYGNNYKLVYCPTVCKYCKVMCKDVGIFYKNGKRALALNDAPFPVMFKKV 1667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2370976 2394905 - Lsi02G002810.1 Lsi02g00281 655023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00281 1667 Pfam DNA replication factor CDT1 like 64 127 IPR014939 -
Lsi02g00281 1667 ProSiteProfiles TIR domain profile. 551 716 IPR000157 GO:0007165
Lsi02g00281 1667 ProSitePatterns Soybean trypsin inhibitor (Kunitz) protease inhibitors family signature. 1492 1508 IPR002160 GO:0004866
Lsi02g00281 1667 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 552 1221 IPR044974 GO:0006952
Lsi02g00281 1667 Pfam NB-ARC domain 746 950 IPR002182 GO:0043531
Lsi02g00281 1667 Pfam Trypsin and protease inhibitor 1492 1666 IPR002160 GO:0004866
Lsi02g00281 1667 Gene3D Ribonuclease Inhibitor 1052 1209 IPR032675 -
Lsi02g00281 1667 Gene3D - 1486 1667 - -
Lsi02g00281 1667 Gene3D - 885 969 IPR042197 -
Lsi02g00281 1667 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 552 1221 - -
Lsi02g00281 1667 CDD STI 1491 1666 IPR002160 GO:0004866
Lsi02g00281 1667 SUPERFAMILY Toll/Interleukin receptor TIR domain 545 694 IPR035897 -
Lsi02g00281 1667 Pfam TIR domain 552 719 IPR000157 GO:0007165
Lsi02g00281 1667 SUPERFAMILY Winged helix DNA-binding domain 956 1059 IPR036390 -
Lsi02g00281 1667 SUPERFAMILY Winged helix DNA-binding domain 62 191 IPR036390 -
Lsi02g00281 1667 SUPERFAMILY STI-like 1488 1667 IPR011065 -
Lsi02g00281 1667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 716 979 IPR027417 -
Lsi02g00281 1667 SMART CDT1_2 60 189 IPR014939 -
Lsi02g00281 1667 Gene3D - 717 878 IPR027417 -
Lsi02g00281 1667 PRINTS Disease resistance protein signature 750 765 - -
Lsi02g00281 1667 PRINTS Disease resistance protein signature 827 841 - -
Lsi02g00281 1667 PRINTS Disease resistance protein signature 920 934 - -
Lsi02g00281 1667 PRINTS Disease resistance protein signature 1279 1295 - -
Lsi02g00281 1667 Gene3D - 394 491 IPR038090 -
Lsi02g00281 1667 Gene3D - 550 716 IPR035897 -
Lsi02g00281 1667 Gene3D Ribonuclease Inhibitor 1210 1340 IPR032675 -
Lsi02g00281 1667 SMART kul_2 1491 1667 IPR002160 GO:0004866
Lsi02g00281 1667 SMART till_3 552 691 IPR000157 GO:0007165
Lsi02g00281 1667 SUPERFAMILY L domain-like 1073 1341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00281 - - - mcha:111008570 1506.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00279 Lsi-Chr2:2360483 Lsi02g00281 Lsi-Chr2:2370976 9.87E-84 dispersed
Lsi02g00281 Lsi-Chr2:2370976 Lsi03g01505 Lsi-Chr3:26063385 0 dispersed
Lsi05g01006 Lsi-Chr5:17539636 Lsi02g00281 Lsi-Chr2:2370976 3.02E-08 dispersed
Lsi05g01008 Lsi-Chr5:17547614 Lsi02g00281 Lsi-Chr2:2370976 5.34E-09 dispersed
Lsi11g00521 Lsi-Chr11:5493740 Lsi02g00281 Lsi-Chr2:2370976 1.15E-13 dispersed
Lsi11g00522 Lsi-Chr11:5497447 Lsi02g00281 Lsi-Chr2:2370976 1.31E-22 dispersed
Lsi02g00280 Lsi-Chr2:2365341 Lsi02g00281 Lsi-Chr2:2370976 1.93E-97 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00281 . . . . . . . . . . . . . . . . . . . . Bhi08g01361 . . Lac10g0334 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013337 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 2 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00281 Lsi_Chr02 FPKM 2.61534 3.032742 7.981278 8.544481 45.512924 49.66679 46.303715 4.572835 4.66285 4.4595