Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00285 ATGTCTACAGTGGAAGAAAAGCTAGATGAAATTGAACCTTCAACAAGGAATAATGAGGAATCAGTGGAAGAAGATGAAGAAGAGGAGGATCTTTCATGGTCATCAGACTCTGAGATTGGAGATGCATTGGACTGGTTGGATGCAAAGGAAGATAGAGAAGCAGTAGATGGGGCTTTTTCACTCAATGCTAGACGTCCTAATGCTCATGGCGGGCTTTATTCTCGTCATAATTCCTCAAGTCTTCAACCTCTCTCAAATCGGAATCAAAAGTTTACCAATCACATTCGAGCTTCACCTCTTGCGGAATGGGAAGGGAGGTTTAATGTGGGAATGTCAAATTCTGTTACCACTGCCATTCGTGACAGTGTCAAGGAAATGGCTATAGGAAAGACGAAAACTACAGAGAAAGCCGATCGCGCAACTGTTGAACAGGCAATTGATCCTAGAACTCGAATGGTTTTATTCAAGATGCTCAACCGAGGTGTTTTTCATGACATTAATGGCTGCATTTCTACTGGGAAAGAAGCTAATGTCTATCATGCAACGAAATCTGATGGTCAAGAATTTGCTATCAAAATCTACAAAACCTCAGTTTTGGTGTTTAAGGACAGGGATCGCTATGTCCAAGGTGACTACCGTTTCAGGCATGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCTGAGAAGGAAATGAGGAATTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGACTCCTCTCCTCTTGAGACTGCATGTGCTGGTCATGGAGTTCATTGGTATGTATACGGATTTCTTTAAAAAACATGGCGTAGCTGTAATGACAATACGAGAACTGTTTGATTTTATAGTTGATCCATGCCTCACTGATGAGACCATCGATAATTATCTAGAAGAGATGCAAGATAAAATCTCGGCAAGAGGGGATATATCAGTGGAGGATGAAATTGCAGATTCTGTATTTGTCCAGTCATATATTCCGAAGACACTGGATAGTGTCAAACATGCTGAAGAAGATGTAATACGTTTAACAAGTGGTCAGGACACTGAAGATATGTACTATAAGACCATTACAGGATTAAAACAGGCCCTTCCAAGAGTTCAACCTGCGTCGGAGCTAAAAGATGAGGAAGAACATAATGCAGACCCAATTGAACCGTCTGAAAACGTAACCAGTTTGTTAAATTCTTGTGAGAAAGAGACCGAATCAACATCAGAGGAAGAAGAGAGCTCAAATGAGTCAGAAGGAGGACCAGGTTCTTCAACGGAGACGACGCAGACGCTAGTTGACAGGAAAACTGCTAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGGCTCGCAAGAACAAGGTTCCAAAGGCTGTAAAGAAACGAAAGAAGAAGTTGGCAAAGTCCCATAAGTAG 1428 41.74 MSTVEEKLDEIEPSTRNNEESVEEDEEEEDLSWSSDSEIGDALDWLDAKEDREAVDGAFSLNARRPNAHGGLYSRHNSSSLQPLSNRNQKFTNHIRASPLAEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAIKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRLHVLVMEFIGMYTDFFKKHGVAVMTIRELFDFIVDPCLTDETIDNYLEEMQDKISARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQDTEDMYYKTITGLKQALPRVQPASELKDEEEHNADPIEPSENVTSLLNSCEKETESTSEEEESSNESEGGPGSSTETTQTLVDRKTARKENKKKVKEEKREARKNKVPKAVKKRKKKLAKSHK 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2444544 2450612 - Lsi02G002850.1 Lsi02g00285 655027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00285 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 20 265 - -
Lsi02g00285 475 Gene3D Phosphorylase Kinase; domain 1 163 264 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 375 389 - -
Lsi02g00285 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 268 473 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 419 433 - -
Lsi02g00285 475 Pfam RIO1 family 177 265 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 1 38 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 19 35 - -
Lsi02g00285 475 Gene3D Transferase(Phosphotransferase) domain 1 265 331 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 390 404 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 1 18 - -
Lsi02g00285 475 Coils Coil 437 457 - -
Lsi02g00285 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 268 473 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 374 475 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 458 475 - -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 65 85 - -
Lsi02g00285 475 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 20 265 - -
Lsi02g00285 475 SUPERFAMILY Protein kinase-like (PK-like) 166 265 IPR011009 -
Lsi02g00285 475 MobiDBLite consensus disorder prediction 434 457 - -
Lsi02g00285 475 SMART rio_2 135 290 IPR000687 GO:0004674|GO:0005524
Lsi02g00285 475 PIRSF STPK_RIO1 1 268 IPR017407 GO:0004674
Lsi02g00285 475 PIRSF STPK_RIO1 266 475 IPR017407 GO:0004674
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00285 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - csv:101208620 499.975
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g881 . Blo16g00244 . . . . Bma06g00239 . Cmo13g00800 . . . . . . Cpe20g00338 . . . . . . . . . . . . . . . . Cone16ag0055 . . Lsi02g00285 Csa01g00757 Chy12g01210 Cme12g01632 . . Bda11g01629 . . . . . Sed01g1812 . . Cma13g00771 . Car13g00618 . . . Bhi08g01369 Tan05g2119 Cmetu12g0770 Lac10g0339 Hepe07g2309 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00285 Lsi_Chr02 FPKM 5.331047 7.221033 14.362995 15.064142 15.554258 16.111155 16.561123 20.351583 19.674706 19.905466