Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00286 ATGCCGCCAAGACGATATGCTGTTGGACGGGCCGATGAGGCCACTCACCCTGACTCCATTCGAGCCACCTTGGCTGAGTTCATTTCCACTTTCATCTTCGTCTTCGCCGGCGAAGGCTCCGTTCTTGCTCTTGATAAAATTTTCAGGCCAGCTGATTATGGTAGTTATGGCCATGGAACTTACGGCCGAGGAGGTTACGGTTACAGTCACGGTCACGGTTATGGTAGAAGGGGGGCCGACACAGGCAGAGCTGCATCGGATTTAGTAGTGATAGCGGTAGCGCATGCGTTTGCGCTGTTCTCGGCGGTGGCGGCGAGTATCAACATATCGGGTGGGCATGTGAATCCTGCAGTAACTTTTGGGGCTCTTCTTGGAGGAAGGATCTCTCTTATCCGTGCATTCTTCTATTGGGTTGCTCAGATCTTGGGTGCCATTGTTGCTTCACTTCTCTTGAGACTCGCAACGGGTGGCATGAGGCCTATGGGGTTCTTTGTGTCATCAGGGATATCAGAATTGCACGGATTTCTACTAGAGATAGTGCTTACATTTGCTTTGGTCTACACAGTCTACGCAACAGCAATAGACCCAAAGAGGGGCAGTTTGGGAACAATAGCACCACTGGCAATCGGTTTAATAGTCGGGGCCAATATTCTGGTGGGTGGGGCCTTTGATGGGGCCTGCATGAACCCAGCCAGGGCATTTGGGCCGTCCTTAGTGGGCTGGAGATGGGACAATCATTGGATCTATTGGATCGGCCCATTATTAGGAGGTGGGCTTGCGGCCCTTGTATATGAGTACTTGGTGATTCCAGTTGAACCTCCTCTGCACACACACCAGCCTTTAGCTCCTGAGGATTACTAA 861 51.57 MPPRRYAVGRADEATHPDSIRATLAEFISTFIFVFAGEGSVLALDKIFRPADYGSYGHGTYGRGGYGYSHGHGYGRRGADTGRAASDLVVIAVAHAFALFSAVAASINISGGHVNPAVTFGALLGGRISLIRAFFYWVAQILGAIVASLLLRLATGGMRPMGFFVSSGISELHGFLLEIVLTFALVYTVYATAIDPKRGSLGTIAPLAIGLIVGANILVGGAFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPLHTHQPLAPEDY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2454034 2456595 + Lsi02G002860.1 Lsi02g00286 655028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00286 286 Pfam Major intrinsic protein 14 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 Gene3D Glycerol uptake facilitator protein. 5 272 IPR023271 -
Lsi02g00286 286 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 PRINTS Major intrinsic protein family signature 210 232 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 PRINTS Major intrinsic protein family signature 132 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 PRINTS Major intrinsic protein family signature 177 195 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 PANTHER AQUAPORIN-8 79 286 IPR034294 -
Lsi02g00286 286 PANTHER AQUAPORIN-8 3 49 IPR034294 -
Lsi02g00286 286 TIGRFAM MIP: MIP family channel proteins 25 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 PANTHER - 79 286 - -
Lsi02g00286 286 PANTHER - 3 49 - -
Lsi02g00286 286 SUPERFAMILY Aquaporin-like 13 277 IPR023271 -
Lsi02g00286 286 CDD MIP 21 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lsi02g00286 286 ProSitePatterns MIP family signature. 113 121 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g01292 Lsi-Chr1:11208708 Lsi02g00286 Lsi-Chr2:2454034 2.58E-100 dispersed
Lsi02g00286 Lsi-Chr2:2454034 Lsi02g02816 Lsi-Chr2:34324196 9.15E-78 dispersed
Lsi02g00286 Lsi-Chr2:2454034 Lsi03g01989 Lsi-Chr3:31267990 1.87E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00286 K09873 - csv:101208863 501.516