Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00290 ATGGCTCAAACGACGTCGTTTAGTTTCGCTAACCATAAAACTTCTTCCAATTTGGAGCGCTTTCTTCAATGCGTCACTCCTTGTGTTCCTTGGCGAACTCTTCCTCGGAGCTGCCTTCATGATCTCAATAGTCAGTGGCAACAACCTGATAAAGATACCATTCAATACTTCACGCTCGGCGAGCTGTGGGATTACTACAATGAATGGAGTGCATATGGTGCTGGTATCCCAATACAGATCAATGGTTCGGAAACTGCTACGCAGTTCTACGTGCCGTATCTGTCTGCAATTCAGATCTACACAAGCAAGCCTGTTGCACCTTCCAGGTATACTGAAGGAATGTTTGATATAGTACTAATTAGTTTTGATTGCATTGTGTTGCACGTAAGCTATATTTGTTCGATTTCTCTTTGTAGAAATCGGAGATATGATAGCGACATGGCAGAATGTGAAAGCGATTCTTGGAGCGATGATAGCTGGAGTGATAACCTGTCAAGATCCCTGAGCAACAACTCTAGCAGGACATGGGATGCGGTTTCTGAAGATTCAAGCTTCGACCAGGAGGGATCATGGCCGCTGAGGGAAAAACTTGGATACCTCTCTTTACAGTATGTGGAGATGTCTTCTCCTTATTGGAGAGTGCCTTTTATGGACAAGATAACAGAGCTAACTCAAACCTATCCAGCACTAACTACACTTAGGAGTGTGGATCTTTCTCCTGCTAGTTGGATGGCTGTTTCTTGGTACCCTATTTATCATATCCCTAGTCAGAAAAATGACAAAGACTTCGCGACGTGCTTTCTAACCTATCATACATTATCTTCATCTTTCCAAGATTGCTCTATGGATCATGAAGGGCAAGATGGATGTCATGCCGAATCCGATACCGGGGGTCAAACCGACGACAAAACTAGTACCTCTACTTCTACTTGCCTTTACCCATTTGGGCTGGCCACTTATAGAATGCAGGGAGATCTGTGGTTGAAGCCAGAGACGTCTGATTACGAACGAATCGTCGATCTCTATCATGCTGCCGATTCATGGTTGAAGCAGCTCGGCGTTCATCATCATGACTTCAACTTCTTTTCCCTTCACTCAACCTTGTAA 1107 44.26 MAQTTSFSFANHKTSSNLERFLQCVTPCVPWRTLPRSCLHDLNSQWQQPDKDTIQYFTLGELWDYYNEWSAYGAGIPIQINGSETATQFYVPYLSAIQIYTSKPVAPSRYTEGMFDIVLISFDCIVLHVSYICSISLCRNRRYDSDMAECESDSWSDDSWSDNLSRSLSNNSSRTWDAVSEDSSFDQEGSWPLREKLGYLSLQYVEMSSPYWRVPFMDKITELTQTYPALTTLRSVDLSPASWMAVSWYPIYHIPSQKNDKDFATCFLTYHTLSSSFQDCSMDHEGQDGCHAESDTGGQTDDKTSTSTSTCLYPFGLATYRMQGDLWLKPETSDYERIVDLYHAADSWLKQLGVHHHDFNFFSLHSTL 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2480434 2486088 - Lsi02G002900.1 Lsi02g00290 655032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00290 368 MobiDBLite consensus disorder prediction 288 307 - -
Lsi02g00290 368 Pfam Protein of unknown function (DUF789) 16 362 IPR008507 -
Lsi02g00290 368 PANTHER PLANT/F9H3-4 PROTEIN 10 366 - -
Lsi02g00290 368 PANTHER T15D22.8 10 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00290 - - - csv:101213420 605.905
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00290 Lsi06g01664 CCT
Lsi02g00290 Lsi06g01664 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00290 Lsi-Chr2:2480434 Lsi09g00622 Lsi-Chr9:6862254 2.64E-47 dispersed
Lsi02g00290 Lsi-Chr2:2480434 Lsi06g01316 Lsi-Chr6:23739356 2.05E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g61 . Blo16g00284 . Bda15g00685 . . Bma06g00276 . Cmo13g00856 Cmo18g00090 . Cma11g00016 . Car11g00014 Sed12g2536 . Cpe04g01632 Bhi02g00652 Tan09g2408 Cmetu02g1647 . Hepe09g0027 . . Cla06g01763 Cam06g1957 Cec06g2007 Cco06g2013 Clacu06g1914 Cmu06g1854 Cre06g2668 . . . . Lsi02g00290 Csa01g00985 . Cme12g01567 . Blo15g00197 . . Bpe07g00901 . Bma03g01232 Bma08g00270 . Cmo10g00034 Cmo11g00015 Cma13g00825 Cma18g00300 . . Cpe09g00947 Cpe18g00923 Bhi08g01532 . . . . . . Cla03g00374 Cam03g0394 Cec03g0380 Cco03g0395 Clacu03g0393 Cmu03g0998 Cre03g0690 Lsi06g01664 Csa01g00030 Chy02g02685 Cme02g02091
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006565 1 3 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 4 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00290 Lsi_Chr02 FPKM 0.0 0.0 0.0 0.0 13.109709 12.074116 12.274368 0.0 0.0 0.0