Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00306 ATGGGGAAGTCGCCAGGGAAATGGATCAAGACCATCTTGTTTGGGAAGAAATCTTCCAAATCTAATCTTTCTAAGGGCAGAGAGAGAAATGGAAATGAGAAAGAAGTATTGGTATCTGCCAAGGCATCAGAAACTACTACCGTTATTAGTCATCCTGTAGCTTCACATCCAACCCCAAATACCATAGATACAAATGAAGGGGTGTCAAAAATTACCAACAATGAGGCATCTAATGTGTTGCATGAAAGATCAATATCAATGCCAGGAAATCAAGATGCAGAAATTCAAGGATCTACCTGCCAAGATGCACCAACTGATCCTGAGAGAATCCGTGAGGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGCCCACCTTTTCACCTTTGTCTCGCAATCATCTTTTGAAGCTGGACTTTTGTCCCCTTCAAAGTTGTGATTATTGGGACTTGAAGGCAAGAGGCTTCATTGTTGTACTTGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCGCTCATTCGTGGTCATTTGGTAAGGAGACAGGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTCCAGGCTATTGCTCGGGGAAGAAGAGTGAGGCTTTCTGATGTAGGGTTCGAAGTGCAGAACAAATGTAGATTAGTGCAGATACAGGATCAACCATTAGTAGATCCTGCTGGAGCAAGCCTCTCTACACGAATGGCAAAACTTTCTGCAAATGCTTTCACTATCAAGCTTGCTTCATCTACAACTTCAAAACCTATGCAACTCTATTTTGATAATGGAGATGAAAATTCAGTCTTGAAATGGTTAGAACGTTGGTCAAATTCTAGGTTTTGGAAACCAATTCCCCAAGTAAAAAAAGCCCCTGAGTCTAAATCTCAAAGAAGACTGAGCACTGGTCAAACTGGAGAGGCACATACTGTGAGATCAAAGCGCACAAGGAGAGTTCCTACTGCAAACAATGACAGTGCTGCTGTCCAGTCGTCTACAGAATTTGACAAACCCAAACGGAATTTTAGAAAAGTCTCTAGTCATTCAGCCGCTGAGCAGGTTCAGGAGAATCCCCAGATGGAGCTTGAAAAGGTGAAGCGTAGTCTGAGAAAGGTCCATAACCCTGTCCTTGAGAATCCTGCCCAAACAGAAGTTGATGCCGAGAAGCCCAAGGAAAGTTTGGAGAAGGCTTCTAATGGTCTAACCCGTGACCTTTTGGCAAGAGGTACTAGTAATTCTTCTGAGAAGATGAAAAAAGAGGCAATCTCAACGAATCTCGTCCAGCCTGATTTGGAAACAACTCTTGAGTCGCTACCAATCAAAGAGATAGTTAACGTACCTACTAGTGATCCAGTTGTAGATTCGCAGCCTTTGATTGAGAGCAGTGACAAAGATAGGAGCATTGCTGGAGATGAGGCTGCTGTGGAGACTAAGCCTTTGACAGAGAGCTACCATAAAGACGAAATCAACCCATTATCAAATGGGGAATCGAACCACAAGGAAGATTATACTAACGAGAATCCGAAATCTGGCAGGAAATCCTCTACTCCAGCCAAGCAAGAGCGAGTGGAGAATGGGTTGCAGCACAGTCCAACCTTACCTAGCTACATGGCAGCAACTGAATCTGCAAAGGCAAAACTAAGAGCACAAGGATCTCCAAGATTTGGACAGGATAGTGAAAAAAATAACAACCTCAACCGACGTCATTCGTTACCGTCACCCACTAATGCTAAAATTAGCTCACAGTCTCCACGAACACAAAGACTTGTTCAAGCAGGTGGCAAAGGAGGAAATAAAAATGACAAGGCACTTCTGGGATCAAGAGATGGAAATGGAAAGGTAATCCAAGCAGATTGGAGAAGGACAAATATTCGTCTGATTTCCTTCCCATTCATCCTCTGTTTATTGCTCGTTCTACTTCAAAAAGTAATCAACAATGAATTGGATAAGCCGAAGAACAATTGTGGTTGTGTTTGTGTTGATACGAATGGAGATGGTATATGTGAGAAAGTTTGTGGGTTAGAGTATTCAACTTTGAGACAAGCAGCAAGCTGCCCCATTCCAAGTCCTCCACAATGGCCTCCCGTATTGCAAATGCCTGCTCCTGATTTCCGTGCTGTGAGAACAGATTTTTTTCCATATAAAGACTTGCCAAATGAATCATGCAGGGAGTCAATGTCATGTCCTGTTACTATGCTTTTCACTGGAAATAATCGCTCTCTTGGAAATATTTTGGCTGCAAGTATGGTCCCAAGTTCTTTGTCTTGGAATTCTTCTGATGTTCTGTATGGTGCGTCTCTTAATGTTTTGGGATCAGCGTCGAGGCCTAGAACAAACAATTATATTGATCCTGCTTTCTTTTCAAACCTTCCTTTATATAATATGCAACGTCAGTGTGTGACAGGCTCGACAATGTCAATTCCTGTTTCAATATTCTCTCTTACAAAGACACAAGATATTGCCTGTGTTCAAGGTCTACAATTGTGGCGCAATAGTTCTTCAGAGGTGAATGATGAGATATACAGAGGTTACCAAAACGGGAATTCAGAGGGGAAAATCAATGAGATTCTTTCAGGTTTTAATTTCTTAAATTCGGATGCGATCAATTTTAATGTGACTATATGGTATAATTCATCATATAAGAGTGACATTGGCCGTTCTTCGAACGTTTTGTTGCGGGTTCCACGCTCGGTTAATCTGGCATCCAATGGCTATCTTAAGTTTTTGCTAGGAGCAGGCACAGAGATGCCCTTTGAGTTTGTCAAAGACATGCCGAAACCTGCAACAAAGATCAGGCTGGATTTCTCTTCTATACTTGGTGCACTCTTTTTTACGTGGGTCATCCTCCAGCTTTTTCCAGTTATCTTGACATCTTTGGTATATGAGAAGCAACAGAAACTGAGAATCATGATGAAAATGCATGGGCTTGGTGATAGGCCTTATTGGATGATTTCGTATGCTTATTTTCTCACAATTTCTGCAATATACGTGTTTTGTTTTGTGATGTTTGGATCAGTTATAGGGCTAAATTTTTTTACAATGAATGACTACAGTATCCAGTTTGTGTTCTATCTCTTATTTATAAATTTGCAAGTCTCCCTGGCCTTTCTAGCGGCTGCCATGTTTTCAAATGTCAAGACTGCTGAAGGTGGATGGATCATAGTTATGGAGTTATATCCTGGATTTTTGCTGTATCGTGGGTTGTATGAGTTTGCATTTTATTCTTTCACTGGGAATCTAATGGGGACTTATGGGATGCGCTGGGGAGATTTGACTGATAGTACTAATGGAATGAGAGAAGTCTTGATCATTATGCTTGTTGAGTGGATAGTTGTGCTTCTAGTTGCATATTGTATCGATAAAGTTTTATCTTCGGGAAGTTGGACGTGTCCATTATTTTTCCTCCAAAGACATGACAAGAAACCTCCATCTCAGAATCCTGATTTGGAAATGCAAGGTTCAAAAGTTTTGGTTCAAACCGATAAACCTGATGTCAGACAAGAGAGGGAGAAGGTTGACAAGTTGCTAAAGGAAGGAGATCCAAGTCATGCCATCGTTTGTGACCATCTCAAAAAGGTATATCCGGGAAAGGATGGAAACCATGAGAAGTTTGCAGTTAGAGGACTATCTCTTGCTTTGGCTCGAGGAGAATGCTTTGGGATGCTAGGTCCTAATGGTGCGGGAAAGACCTCCTTTATCAGTATGACGTTCCTTTTTTTACTTGTAAATTTCTCTCACACGAGGATCCTTCTTCAGATGATTGGTCTTATAAAACCAACCGCTGGAACAGCCTTTGTTGAAGGTCTGGACATAAGGACTGAGATGAATGGCATATATGCAAGCATGGGTGTTTGTCCACAGCATGACCTGCTATGGGAAACCTTAACAGGAAGGGAGCACCTACTCTTTTATGGCAGACTGAAGAATTTAAAAGGTTCTGCTTTAATACAAGCAGTGGAAGAATCTCTCAAGGGCGTCAACCTCTTCCATGGAGGAGTAGCAGAAAAACAAGCTGGGAAGTACAGTGGAGGTATGAAGAGGAGGCTTAGTGTTGCTATTTCACTAATTGGGGATCCTAAAGTTGTTTATATGGATGAGCCAAGCACTGGCCTAGATCCAGCTTCAAGAAAAAATTTATGGAATGTTGTGAAGCGTGCGAAGCAAGATCGAGCAATCATCCTTACTACACATTCTATGGAAGAGGCGGAAGTCTTATGCGATCGAATAGGAATTTTTGTAGATGGAAGCCTGCAGTGTATTGGAAATCCAAAAGAGCTTAAAGCCAGATATGGTGGGGCTTATGTATTTACAATGACAACATCCCCTGCTCATGAAGGAGATGTTGAGAACATGGTGAAGCATTTGGCCTCTGGAGCTAGCAAAATATACCATTTATCTGGAACTCAAAAATTTGAGCTTCCAAAACACCAGGTTCGTATTGCTGATGTGTTTCAAGCAGTTGAAAATGCCAAAAGCAGGTTTACAGTATTGGCTTGGGGTTTGGCTGACACAACTTTAGAGGGCGTCTTTATCAAAGTTGCTAATGGCGCTGAGTCTTCAGATATGCTTTCTTGA 4608 41.91 MGKSPGKWIKTILFGKKSSKSNLSKGRERNGNEKEVLVSAKASETTTVISHPVASHPTPNTIDTNEGVSKITNNEASNVLHERSISMPGNQDAEIQGSTCQDAPTDPERIREEEAATKAQAAFRGYLPTFSPLSRNHLLKLDFCPLQSCDYWDLKARGFIVVLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGFEVQNKCRLVQIQDQPLVDPAGASLSTRMAKLSANAFTIKLASSTTSKPMQLYFDNGDENSVLKWLERWSNSRFWKPIPQVKKAPESKSQRRLSTGQTGEAHTVRSKRTRRVPTANNDSAAVQSSTEFDKPKRNFRKVSSHSAAEQVQENPQMELEKVKRSLRKVHNPVLENPAQTEVDAEKPKESLEKASNGLTRDLLARGTSNSSEKMKKEAISTNLVQPDLETTLESLPIKEIVNVPTSDPVVDSQPLIESSDKDRSIAGDEAAVETKPLTESYHKDEINPLSNGESNHKEDYTNENPKSGRKSSTPAKQERVENGLQHSPTLPSYMAATESAKAKLRAQGSPRFGQDSEKNNNLNRRHSLPSPTNAKISSQSPRTQRLVQAGGKGGNKNDKALLGSRDGNGKVIQADWRRTNIRLISFPFILCLLLVLLQKVINNELDKPKNNCGCVCVDTNGDGICEKVCGLEYSTLRQAASCPIPSPPQWPPVLQMPAPDFRAVRTDFFPYKDLPNESCRESMSCPVTMLFTGNNRSLGNILAASMVPSSLSWNSSDVLYGASLNVLGSASRPRTNNYIDPAFFSNLPLYNMQRQCVTGSTMSIPVSIFSLTKTQDIACVQGLQLWRNSSSEVNDEIYRGYQNGNSEGKINEILSGFNFLNSDAINFNVTIWYNSSYKSDIGRSSNVLLRVPRSVNLASNGYLKFLLGAGTEMPFEFVKDMPKPATKIRLDFSSILGALFFTWVILQLFPVILTSLVYEKQQKLRIMMKMHGLGDRPYWMISYAYFLTISAIYVFCFVMFGSVIGLNFFTMNDYSIQFVFYLLFINLQVSLAFLAAAMFSNVKTAEGGWIIVMELYPGFLLYRGLYEFAFYSFTGNLMGTYGMRWGDLTDSTNGMREVLIIMLVEWIVVLLVAYCIDKVLSSGSWTCPLFFLQRHDKKPPSQNPDLEMQGSKVLVQTDKPDVRQEREKVDKLLKEGDPSHAIVCDHLKKVYPGKDGNHEKFAVRGLSLALARGECFGMLGPNGAGKTSFISMTFLFLLVNFSHTRILLQMIGLIKPTAGTAFVEGLDIRTEMNGIYASMGVCPQHDLLWETLTGREHLLFYGRLKNLKGSALIQAVEESLKGVNLFHGGVAEKQAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRKNLWNVVKRAKQDRAIILTTHSMEEAEVLCDRIGIFVDGSLQCIGNPKELKARYGGAYVFTMTTSPAHEGDVENMVKHLASGASKIYHLSGTQKFELPKHQVRIADVFQAVENAKSRFTVLAWGLADTTLEGVFIKVANGAESSDMLS 1535
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2629077 2646104 - Lsi02G003060.1 Lsi02g00306 655048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 386 412 - -
Lsi02g00306 1535 Pfam IQ calmodulin-binding motif 172 189 IPR000048 GO:0005515
Lsi02g00306 1535 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1196 1450 IPR003439 GO:0005524
Lsi02g00306 1535 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 629 1060 - -
Lsi02g00306 1535 PANTHER ABC TRANSPORTER A FAMILY PROTEIN 1062 1534 - -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 395 409 - -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 470 496 - -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 459 616 - -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 331 346 - -
Lsi02g00306 1535 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1195 1441 IPR027417 -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 520 548 - -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 566 600 - -
Lsi02g00306 1535 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 629 1060 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lsi02g00306 1535 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1062 1534 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lsi02g00306 1535 Pfam Protein of unknown function (DUF4005) 527 610 IPR025064 -
Lsi02g00306 1535 CDD ABC_subfamily_A 1200 1438 - -
Lsi02g00306 1535 SMART iq_5 111 139 IPR000048 GO:0005515
Lsi02g00306 1535 SMART iq_5 169 191 IPR000048 GO:0005515
Lsi02g00306 1535 Gene3D - 1185 1446 IPR027417 -
Lsi02g00306 1535 ProSiteProfiles IQ motif profile. 172 194 IPR000048 GO:0005515
Lsi02g00306 1535 SMART AAA_5 1226 1426 IPR003593 -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 503 519 - -
Lsi02g00306 1535 MobiDBLite consensus disorder prediction 299 371 - -
Lsi02g00306 1535 Pfam ABC-2 family transporter protein 864 1068 - -
Lsi02g00306 1535 ProSitePatterns ABC transporters family signature. 1352 1366 IPR017871 GO:0005524
Lsi02g00306 1535 Pfam ABC transporter 1260 1379 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00306 - - - csv:101218105 1379.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00306 Lsi06g01481 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00306 Lsi-Chr2:2629077 Lsi06g01480 Lsi-Chr6:25281242 0 dispersed
Lsi01g01901 Lsi-Chr1:22484726 Lsi02g00306 Lsi-Chr2:2629077 2.78E-50 transposed
Lsi03g00409 Lsi-Chr3:4666444 Lsi02g00306 Lsi-Chr2:2629077 2.38E-11 transposed
Lsi04g01846 Lsi-Chr4:25576421 Lsi02g00306 Lsi-Chr2:2629077 1.23E-07 transposed
Lsi02g00306 Lsi-Chr2:2629077 Lsi06g01479 Lsi-Chr6:25280780 3.43E-39 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g522 Blo04g00762 Blo16g00192 . . . Bpe13g00281 Bma06g00182 . . . . Cma11g00159 . . Sed14g0146 . Cpe04g01511 Bhi02g00339 Tan09g2144 Cmetu08g1425 . Hepe09g0133 . . Cla06g01603 Cam06g1777 Cec06g1828 Cco06g1836 Clacu06g1739 Cmu06g1684 Cre06g2500 . . Cone13ag0083 . Lsi02g00306 . Chy12g01330 . . . Bda11g01692 Bda14g00842 . Bpe15g00611 Bma03g00819 . . . Cmo11g00151 . . . . . . Bhi08g01403 . . . Hepe07g2288 . . . . . . . . . Lsi06g01481 Csa01g00220 Chy02g02513 Cme02g01899
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001221 4 5 2 3 3 2 0 2 2 2 2 2 3 2 2 3 2 1 3 2 2 2 3 2 2 2 2 3 8 2 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00306 Lsi_Chr02 FPKM 40.201279 44.677921 57.631287 57.134434 53.879887 54.416267 52.445896 41.786884 41.995579 41.564919