Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00307 ATGCAAGAAGAGCAATTGGAATCCGCTCGAGCAGAAATGGGGGAAGTGAAGGAAGAAAACCAGAGACTAAAACATAGTTTAAACCAAATAATGAAGGATTATGAAGCCCTAAAAATGCAATTTCTAGGGATTGTTGGACAAGAATCCAAGAAATTACCAGATCAAGACGACATGTCGAATAAGGAACAACAACACGATGACGATCAAATCGAACTGGTTTCACTAACACTTGGGAGATTTCCCGTGGCAGAGAAGAAGAAGGTGGTCGATGAAAAAACCTCAGTGAATATTATTATTGGTGGCGACGATGAAGAAGCCGCCGTTAAAGAGGCGTTATCTCTCGGTTTGAATTGCAAATTCAAACGGGAAGAATCAATGACGGCCGTCGTTAAAGAAGTCGATTCTCCGAAAAGTTTCGATCACGAGACGAAGGAGGAAGCTGGAGAGACGAATTGGCCACCGAATAAGGGGGTGAAGACGATGAGAAGTGTTGAAGATGATGTTACGCCACCGAATCCGCCCAAACGCGCTAGGATGAATGACGGTTGCCAATGGAGGAAATACGGGCAAAAGATAGCAAAAGGAAACCCATGTCCACGAGCATACTATCGTTGCACAGGCTCGCCGACATGCCCCGTTAGAAAACAAGTCCAAAGATGCGCTGACGACATGTCGATCTTAATCACCACCTATGAAGGTAATCACAACCACCCATTACCTGCCTCCGCCAACGCCATGGCCTCCACCACCTCCGCCGCAGCCTCCATGCTCCTCTCAGGCTCCACCACCTCCACGGCCGCGGCCAGCTCCTCCTCATCCACTACTACAAATAATCTCCACGGCTTAAACTTTTACCAAAATAATTCTAAACCCAATTTTTACTTACCCAATAATTCTTCTATCATTTCATCCACTTCCCCAACTCACCCCACAATCACTTTGGACCTCACTTCAAATCCTTCTTCCTCTTCCTCAAATTCCTCGACCCATTTTGGTAAATTCACACCTAATTTTCCTAATTCTCGTTACCCTTTTACTAGCCAACTTGATTTCGGATCTTCTAGAAACAATGTGTTGTCGTGGAATAACGGCCTTCTAAGTTACAACAGAAATAACCACCCAACTACTACTACCACCACCAATAATATCTATCAAAATTACATCCAACAACGCCACCCTGCCACGTCACTGCCACATCAGCAACCGCCCTTACCCGACACTATAGCCGCCGCTACCAAGGTCATTACGGCAGATCCGAGCTTTCAATCTGCTCTTGCCGCTGCTCTTACGTCGATCATCAGTACTGGGGGTACTAGTGCTGGCCCCACCAAGTCATCGTCGACAAGAGGGGAACAATCGTTGTTTCAGTTGATGGCGGCGACAACGACGACAAATAAAGGAAATGGATGTGGGACGAGCTTTTTGAACAATATTACGACACCGACAACAACGACGAGTAATTCGCCGCCGACGGGGAATATGGTGTTCGTTCCGACGAGTTCGTTGCCGTTTTCGAATTCGAAGAGTGCATCCGCGTCTCCAGGTGATCATATTGATCTTACCAATTAA 1569 46.46 MQEEQLESARAEMGEVKEENQRLKHSLNQIMKDYEALKMQFLGIVGQESKKLPDQDDMSNKEQQHDDDQIELVSLTLGRFPVAEKKKVVDEKTSVNIIIGGDDEEAAVKEALSLGLNCKFKREESMTAVVKEVDSPKSFDHETKEEAGETNWPPNKGVKTMRSVEDDVTPPNPPKRARMNDGCQWRKYGQKIAKGNPCPRAYYRCTGSPTCPVRKQVQRCADDMSILITTYEGNHNHPLPASANAMASTTSAAASMLLSGSTTSTAAASSSSSTTTNNLHGLNFYQNNSKPNFYLPNNSSIISSTSPTHPTITLDLTSNPSSSSSNSSTHFGKFTPNFPNSRYPFTSQLDFGSSRNNVLSWNNGLLSYNRNNHPTTTTTTNNIYQNYIQQRHPATSLPHQQPPLPDTIAAATKVITADPSFQSALAAALTSIISTGGTSAGPTKSSSTRGEQSLFQLMAATTTTNKGNGCGTSFLNNITTPTTTTSNSPPTGNMVFVPTSSLPFSNSKSASASPGDHIDLTN 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2652442 2656836 - Lsi02G003070.1 Lsi02g00307 655049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00307 522 MobiDBLite consensus disorder prediction 50 67 - -
Lsi02g00307 522 MobiDBLite consensus disorder prediction 134 149 - -
Lsi02g00307 522 Pfam WRKY DNA -binding domain 180 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 Coils Coil 6 40 - -
Lsi02g00307 522 Gene3D WRKY domain 172 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 SUPERFAMILY WRKY DNA-binding domain 177 240 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 MobiDBLite consensus disorder prediction 48 67 - -
Lsi02g00307 522 PANTHER WRKY TRANSCRIPTION FACTOR 61-RELATED 4 517 - -
Lsi02g00307 522 MobiDBLite consensus disorder prediction 134 180 - -
Lsi02g00307 522 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 4 517 IPR044810 GO:0003700
Lsi02g00307 522 MobiDBLite consensus disorder prediction 1 22 - -
Lsi02g00307 522 SMART WRKY_cls 179 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lsi02g00307 522 ProSiteProfiles WRKY domain profile. 174 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00307 - - - csv:101218344 787.719
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00307 Lsi06g01483 CCT
Lsi02g00307 Lsi06g01483 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00447 Lsi-Chr1:3726678 Lsi02g00307 Lsi-Chr2:2652442 8.31E-45 dispersed
Lsi02g00307 Lsi-Chr2:2652442 Lsi11g01439 Lsi-Chr11:22919194 3.38E-51 dispersed
Lsi05g00196 Lsi-Chr5:2743592 Lsi02g00307 Lsi-Chr2:2652442 6.25E-41 transposed
Lsi02g00307 Lsi-Chr2:2652442 Lsi06g01483 Lsi-Chr6:25303697 1.48E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g518 . . Bda06g00552 Bda15g00578 Bpe12g00555 Bpe13g00280 . . . . Cma10g00180 Cma11g00161 Car10g00169 Car11g00139 Sed08g0199 Cpe20g00199 Cpe04g01513 Bhi02g00342 Tan09g2157 Cmetu02g0550 . Hepe09g0135 . . Cla06g01605 Cam06g1779 Cec06g1830 Cco06g1839 Clacu06g1741 Cmu06g1686 Cre06g2502 . . . Cone19ag0085 Lsi02g00307 Csa01g00787 Chy12g01329 Cme12g01756 . . Bda11g01690 Bda14g00841 Bpe07g00791 . Bma03g00818 . Sed08g2579 Cmo10g00198 Cmo11g00149 Cma13g00932 . Car13g00772 . . Cpe18g00805 Bhi08g01407 Tan05g2089 Cmetu12g0663 Lac10g0367 . . . Cla01g01429 Cam01g1496 Cec01g1536 Cco01g1582 Clacu01g1520 Cmu01g1412 Cre01g1330 Lsi06g01483 Csa01g00218 Chy02g02515 Cme02g01901
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001916 3 3 2 0 2 2 3 2 2 2 2 2 3 2 2 2 2 1 3 2 2 2 1 2 2 2 2 5 3 4 67
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24751 PF03106 WRKY 4.70E-24 CL0274 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00307 Lsi_Chr02 FPKM 40.119999 44.599064 6.309466 6.370149 2.622323 2.865736 3.689472 0.206126 0.199642 0.340577