Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00309 ATGGCGCCGGTTTTATCTCGGTTACTTCTCCGACGGAATGTTCACGCACCATTTCTTCGCACCTCCACCACCGCCTTTAACTTTTGCAGAACAATTCATTCTTTAGTTTTCTCTACGGTAGAGGTGGATCAAATATCAGGTTCTAAGCCAGAAGATGTTCACAACTTGGTGCAGGGTAAATGGATTGGATCTTCCGGTTGGAACACTATTGTAGATCCTTTAAATGGAGAACCGTTTATTAGAGTTGCCGAAGTCAATGAAACAGAGATTCAGCCATTTGTGAAGAGTCTGACCAAATGCCCGAAGCATGGCTTACATAATCCTTTCAAATCGCCTGAGAGATATCTGTTGTTTGGAGATGTATCTTCCAAGGCTGCCGACATGCTTTCCAAGCCAGAGGTGACTGACTTCTTCGCAAGGTTAATTCAAAGAGTTTCTCCAAAAAGTTATCAGCAGGCTTGTGCTGAAGTAATTGTTACCGTTAAATTTCTACGGAACTTCTCTGGTGATCAGGTTCGCTTCCTAGCAAGGTCCTTTGCAGTACCTGGAGATCATCTTGGACAACAAAGTCATGGTTTCCGTTGGCCTTATGGTCCAGTTGCGATTATCACTCCTTTCAACTTTCCATTAGAAATTCCTGTACTTCAAGTGATGGGTGCACTTTACATGGGCAACAAACCGGTTTTAAAAGTTGATAGCAAGGTTAGCATAGTTATGGAGCAAATGATTCGATTGCTTCACCATTGTGGGCTACCACTGGAAGATTTAGATTTTATAAATTGTGATGGGAAGACAATGAACAAGTTATTGATTGAGGCAAATCCATCCATGACTCTTTTTACCGGTAGCTCAAGGGTGGCAGATAAGTTGGCTGTTGACTTGAAGGGCCGCATTAAATTGGAAGATGCAGGTTTTGATTGGAAAATCTTAGGACCAGATGTTCGAGAGGAAGATTATGTTGCATGGGTTTGTGATCAAGATGCATATGCTTGTAGTGGCCAAAAGTGCTCGGCACAGTCGATACTGTTCATGCATGAGAACTGGTCGACAACTTCACTTATTTCGAAGATAAAGAGTTTTGCAGAGAGAAGAAATTTGACCGATTTAACAATTGGCCCAGTTCTTACTTTCACAAATGAAATGATACTTGATCACGTGAATAAATTGCTCAAGATACCAGGGGCAAAGTTACTCTTTGGAGGGGAACCTTTGAAAAACCATTCCATTCCACCCATATATGGCGCTATAAAACCCACCGCATTATATATTCCACTTGAAGAAATGATGAAAGATGAGAATTATGAGCTTGTGACTAAAGAAATTTTTGGACCATTCCAGATTATTACGGAATATAAGAGAGATCAACTGTCAGTTGTGTTGGATGCTCTTGAGCGGATGCATGCTCATCTAACAGCAGCTGTTGTTTCAAATGACCCTCTCTTTTTGCAGGAAGTTATTGGCAATACTGTGAATGGAACGACATATGCAGGTTTACGAGCGAGAACAACGGGAGCTCCGCAAAACCATTGGTTTGGACCTGCCGGAGACCCTAGGGGCGCAGGTATTGGTACCCCCGAAGCCATCAAACTTGTATGTTTCAGAATGGATCAACATCTTCATCATCCACAACAATGGCATCCCAGGCCAATCCAAGCTACTGTCTGTCCAATTTGCGCAATGCCTCACTTCCCCTTTTGCCCTCCCCATCCATCCTTCAACCAAAACCCTAGATATCCCTTCGGACCCGATCCCTCTTTTCAAACCCCCGGTTTCGACTCTCATCGTCCACCCGTGGGGATGCCGCCTCCGTATATGGGGAATCCCGACGATGGTTTCGGAGATCAGAGGCCGTGGATTAGAAATTCTGCCAATCCAATTGGGCATGTCCCGTTCCACCCTCACAGAGAAGGGGTTTTCCCGCCACCGTATGATTATGGCGGGAATGAATTTGTTAACGACGCTGAAAGAAGCTACAAGAGGCCGAGGGTTGATGATGTGGGTTCGGATGGTGTCGTTCATGAGCTTAATCAGAATCAGAAGAGCGGCAGGAGTTCATATGAGGATGAGCGTAGGTTGAAGTTGATTCGGGATCATGGAGTTGTATCGAGTGGACCGCCTGAAGGTGGTTCTAATTCCTTGCCGAGAATGAATTTGGGTTCTAATAGCGAAGCAAACAGACGCACTCTTGAAAATTCGGTGGGATCTGAAGACCCGGAAGAAGTCGGCAGTACGAGAATCTTGGAAACTAATAACTTTCAAGATCCGGGTAATGGCAATAACGATGGAAGAACTCAAAACTTTCAGGAGAATGGTAGAATTGACACGCGGCGGCTTTCCCAAAACGAAGAATTTTCACATGCTTGTTATGATCAGGTTGGAGGCCATTGGCGTATGCCGCACTCTGTTCCTCCTGAAGCCACCGAAGACAACTATCTTTCTCATAGAAACGAATTGCATTATTCTGATAACCGGCATGCATTTTCCTGGATGGATGATAGAAATAACAGCAAAATGAACATTCTTGATCGTGATTATCAGCCACCCCCTCGCTCTGAGATGAATTCCATCCATATGAGACCGTTTTCATCGCATGGAAATGCTCATCACAGTAGAAACTTGAATTTTGGTGCTGGATACGCTCCACGGCTTTCTGGGGGTGGCAGGTTCTTGGAAAATGGAAGTTCAATTGAAGATTCTCGCTTCTTTGGTGAACAACCCCCTCTTCCTGCTTCTCCACCACCGCCTATGCCTTGGGAAGCACACTTGCACGCTTCTGCAGAGTCTATGGCCTACTCTTCTCAAGCAAAACCTTCATCCCTGTTTCCTGTTCCTGTTAGTACCTCAACAATAACGTCGGCAGCATATTCTTCAGTTCCTGAACACCGTTCCTTTCACCACCATAAACCAATGCCTCACGTTTCTTCTAGCCCTATGATGGAGGATTCTCTGGCATTGCACCCATATTCTAAGAAGTATGCTGCAGATGGAAAAGCTTTTGGATTGAATCAATTGCCTCCGCAAAAGCCCAAAGTTATTGATGCTTCGCATTTATTCAAGCTACCTCATCGGTCTACTCGTCCAGATCATATTGTGGTTATTCTTCGAGGGCTTCCAGGAAGTGGAAAAAGCTATTTGGCAAAGATGTTGCGTGATGTTGAAGTTGAAAATGGTGGTGATGCTCCTCGTATACATTCAATGGACGATTACTTCATGACAGAAGTGGAAAAGGTTGAGGAAGGTGATGCCAAATCATCAAATTCAATTAAAGGCAAGAAGCCAATCATGAAGAAGGTCATGGAATATTGTTACGAACCTGAAATGGAGGAGTTTAGCATTCAGCTTATCATTTCCCATGCCAATGGTAGCATAAAAAGAGGTGGCATGGTTGGTGATAGTCTATACCTTAGTGCCAATGCCACTGCATTCCTTTGCACTAACTACAATGCAGTTTGTTCGGCAATTGATCCTTTTGTTGGTGTGACGTTAAGCACTACCTTTTGTTTTCCTAGCAAGTCTTTGCTTTTGGGATTTGTTATGAGTTCGGGGTATGAAGTTTACATTTTGGAAGCTACCTATAAGGACCCTGCAGGCTGTGCAGCAAGGAATGTGCATGGGTTTAACCTTGATGATATACAAAAGATGGCTAGACAATGGGAAGAAGCTCTGCCTTTGTACTTACAATTGGACATCAAGTCCTTATGTCATGGGGATGACCTTAAAGAAAGTGGAATTCAGGAGGTTGACATGGATATGGAAGAGGAAGACGATGACAGCCCTAGTTTTCAAGAAACGAAGTCTGAGAAGACAGCATTACCTCCTCTAAGAGATTATGCTTCTGAAGATGATGAGAAGAGATGGGATGCAGAACCGGGCCATCTGAGAGACGAAGTAAAAGAGTTAGGTAGGAGTAAATGGTCAAATGATTTAGATGATGATGATACAGAAAGAACTGATGGCCGGAACGGTCATTCAAATGCTCTCTCTGGTCTGATTCAAGCATACGCCAAAGAAGGAAAGTCGGTGCGCTGGATGGACCAGGCTGTTAATACCGGATTCTCAATCGGTGCCGCAAAAAAGGCAAACAGATTATCTTTAGTAATTGGTCCTGGTGCTGGATATAACCTGCAACTTTACTTAGAAGCAAGTAGTTCCAAGAATCAGCCATGTTGTAAAAGTGTTGATTCTCGTTTGGTATAA 4197 43.89 MAPVLSRLLLRRNVHAPFLRTSTTAFNFCRTIHSLVFSTVEVDQISGSKPEDVHNLVQGKWIGSSGWNTIVDPLNGEPFIRVAEVNETEIQPFVKSLTKCPKHGLHNPFKSPERYLLFGDVSSKAADMLSKPEVTDFFARLIQRVSPKSYQQACAEVIVTVKFLRNFSGDQVRFLARSFAVPGDHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQVMGALYMGNKPVLKVDSKVSIVMEQMIRLLHHCGLPLEDLDFINCDGKTMNKLLIEANPSMTLFTGSSRVADKLAVDLKGRIKLEDAGFDWKILGPDVREEDYVAWVCDQDAYACSGQKCSAQSILFMHENWSTTSLISKIKSFAERRNLTDLTIGPVLTFTNEMILDHVNKLLKIPGAKLLFGGEPLKNHSIPPIYGAIKPTALYIPLEEMMKDENYELVTKEIFGPFQIITEYKRDQLSVVLDALERMHAHLTAAVVSNDPLFLQEVIGNTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVCFRMDQHLHHPQQWHPRPIQATVCPICAMPHFPFCPPHPSFNQNPRYPFGPDPSFQTPGFDSHRPPVGMPPPYMGNPDDGFGDQRPWIRNSANPIGHVPFHPHREGVFPPPYDYGGNEFVNDAERSYKRPRVDDVGSDGVVHELNQNQKSGRSSYEDERRLKLIRDHGVVSSGPPEGGSNSLPRMNLGSNSEANRRTLENSVGSEDPEEVGSTRILETNNFQDPGNGNNDGRTQNFQENGRIDTRRLSQNEEFSHACYDQVGGHWRMPHSVPPEATEDNYLSHRNELHYSDNRHAFSWMDDRNNSKMNILDRDYQPPPRSEMNSIHMRPFSSHGNAHHSRNLNFGAGYAPRLSGGGRFLENGSSIEDSRFFGEQPPLPASPPPPMPWEAHLHASAESMAYSSQAKPSSLFPVPVSTSTITSAAYSSVPEHRSFHHHKPMPHVSSSPMMEDSLALHPYSKKYAADGKAFGLNQLPPQKPKVIDASHLFKLPHRSTRPDHIVVILRGLPGSGKSYLAKMLRDVEVENGGDAPRIHSMDDYFMTEVEKVEEGDAKSSNSIKGKKPIMKKVMEYCYEPEMEEFSIQLIISHANGSIKRGGMVGDSLYLSANATAFLCTNYNAVCSAIDPFVGVTLSTTFCFPSKSLLLGFVMSSGYEVYILEATYKDPAGCAARNVHGFNLDDIQKMARQWEEALPLYLQLDIKSLCHGDDLKESGIQEVDMDMEEEDDDSPSFQETKSEKTALPPLRDYASEDDEKRWDAEPGHLRDEVKELGRSKWSNDLDDDDTERTDGRNGHSNALSGLIQAYAKEGKSVRWMDQAVNTGFSIGAAKKANRLSLVIGPGAGYNLQLYLEASSSKNQPCCKSVDSRLV 1398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2670675 2685961 + Lsi02G003090.1 Lsi02g00309 655051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00309 1398 MobiDBLite consensus disorder prediction 661 742 - -
Lsi02g00309 1398 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 306 496 IPR016163 GO:0016620
Lsi02g00309 1398 MobiDBLite consensus disorder prediction 1274 1320 - -
Lsi02g00309 1398 Gene3D - 1030 1223 IPR027417 -
Lsi02g00309 1398 Pfam Aldehyde dehydrogenase family 70 497 IPR015590 GO:0016491
Lsi02g00309 1398 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 27 534 IPR044638 GO:0004029
Lsi02g00309 1398 MobiDBLite consensus disorder prediction 748 767 - -
Lsi02g00309 1398 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 329 340 IPR016160 GO:0016491
Lsi02g00309 1398 SUPERFAMILY ALDH-like 53 523 IPR016161 GO:0016491
Lsi02g00309 1398 MobiDBLite consensus disorder prediction 1251 1325 - -
Lsi02g00309 1398 PANTHER DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 12A1, MITOCHONDRIAL 27 534 - -
Lsi02g00309 1398 MobiDBLite consensus disorder prediction 705 731 - -
Lsi02g00309 1398 MobiDBLite consensus disorder prediction 683 697 - -
Lsi02g00309 1398 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 46 304 IPR016162 GO:0016491
Lsi02g00309 1398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1071 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00309 Lsi-Chr2:2670675 Lsi06g01544 Lsi-Chr6:25796226 1.79E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00309 K00294 K17602 csv:101218580 1376.3