Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00312 ATGAGAGAGACAGAAACCACCATTGTTGGGATTAAACTGCTAATGATATTTGCTTTTGTAATGATATTTCCAACTCTGAAGGCTAATATTGCAGATTTTGATGAGGTATGGCAGAAAAGAGCTGTTGAAGCCAAGAAGGCTTCCTTTGAGGCCTACCAACCCCATCCAGAAGAAGTCACTAGTAATTTCAACATGCAAGTTCACAGATCCTTAGATGGTGCAAATAACACAAGGAGACATTTGAGGAAGTACAATGGTCCATGTTTAGCGACGAATCCGATTGATCGTTGCTGGAGATGCGATAAACATTGGGCTAAAAACCGCAAGAAGCTAGCTGATTGCGCCCTTGGCTTTGGTCGTGGAACAACTGGAGGCAAAAATGGAAGGATTTACGTGGTCCGAGATTCGAGCGATAACGACATGCTGAATCCTAAACCAGGAACCCTACGCTACGGTGTGATACAGGATAGACCACTTTGGATTATATTTGCACATGACATGGTGATTAGGCTAAGTGAAGAGCTTATAATGACTGATAACAAGACATTAGATGGTCGTGGTGCCAATGTGCACATCGCTAATGGTGGTCAAATTACTCTACAATTTGTGAAGAATATAATCATCCATAATCTTCACATTCATGATATCAAGGCTGGCAATGGAGGCCTTATAAGAGACTCTGTGAACCACTATGGATTGCGAACACAGAGCGATGGTGACGGAATCTCAATGTTTGGAGCCTCAAAGATTTGGATAGATCATGTTTCAATGTCTAATTGTCAAGATGGGCTTATAGATGCGGTCATGGCATCTACTGCCATTACCATTTCCAACTGTCACTTCACCCGCCATAATGATGTGATGTTATTTGGTGCAAGTGATAGCTACTCGGATGATCAGATAATGCAGGTAACTCTTGCATTTAATCACTTTGGTAAAGGGTTGGTGCAAAGGATGCCGAGATGTCGATGGGGGTTCGTCCATGTGGTCAATAATGACTACACTCACTGGCTTATGTACGCTATCGGCGGCAGCCACAACCCCACCATTATCAGCCAGGGCAACCGTTTCATTGCCCCACCAAACCCAAATTCCAAAGAGGTGACGAAAAGGGCGTATGCACCAGAAAGCGAATGGAGATCATGGAACTGGAGGTCAGAGGGAGATCTGATGATGAATGGAGCTTTTTTCATTCAATCTGGAAACCCCATCAGAAGATACTCCAAGAAAGATGTTATCCATTCAAAACCCGGGACCTTCGTCTCCAGGCTAACACGATTCGCTGGCCCTCTGAAATGCAGAAAAAACCAGCCCTGTTAG 1320 44.02 MRETETTIVGIKLLMIFAFVMIFPTLKANIADFDEVWQKRAVEAKKASFEAYQPHPEEVTSNFNMQVHRSLDGANNTRRHLRKYNGPCLATNPIDRCWRCDKHWAKNRKKLADCALGFGRGTTGGKNGRIYVVRDSSDNDMLNPKPGTLRYGVIQDRPLWIIFAHDMVIRLSEELIMTDNKTLDGRGANVHIANGGQITLQFVKNIIIHNLHIHDIKAGNGGLIRDSVNHYGLRTQSDGDGISMFGASKIWIDHVSMSNCQDGLIDAVMASTAITISNCHFTRHNDVMLFGASDSYSDDQIMQVTLAFNHFGKGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSHNPTIISQGNRFIAPPNPNSKEVTKRAYAPESEWRSWNWRSEGDLMMNGAFFIQSGNPIRRYSKKDVIHSKPGTFVSRLTRFAGPLKCRKNQPC 439
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2687334 2689511 - Lsi02G003120.1 Lsi02g00312 655054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00312 439 SUPERFAMILY Pectin lyase-like 92 430 IPR011050 -
Lsi02g00312 439 PANTHER PECTATE LYASE 18-RELATED 12 439 IPR045032 GO:0030570
Lsi02g00312 439 PANTHER PECTATE LYASE 12 439 - -
Lsi02g00312 439 Pfam Pectate lyase 177 357 IPR002022 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Lsi02g00312 439 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Lsi02g00312 439 Pfam Pectate lyase, N terminus 29 81 IPR007524 GO:0030570
Lsi02g00312 439 SMART amb_all 166 363 IPR002022 -
Lsi02g00312 439 Gene3D - 91 432 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00312 Lsi-Chr2:2687334 Lsi03g01460 Lsi-Chr3:25486590 0 dispersed
Lsi02g00312 Lsi-Chr2:2687334 Lsi04g00455 Lsi-Chr4:4319274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00312 K01728 - csv:101218812 838.565