Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00315 ATGGCGGTCACTTCACAATCTCCATCTTCCTCCGCTGCTACTGCTGCTCCCTCTCACCTTCCCAACCGCTTCTCCATTTCCAGATTCCGCCACGTCTCTAACCATGCCCGCCCTTCCAGATCCAATCCACTCACCATCGTCGCCATGGCCCCTCAGAAGAAGGTGAACAAATACGACGGCGCTTGGGAGAAAAAATGGTTTGGAGCTGGAATCTTTTACGAGAGCGCGGAGGATGTGGAAGTCGATGTGTTCAAGAAGCTTGAGAAGAAGAAAGTGCTTAGCAATGTCGAAAAAGCAGGGCTGTTATCGAAGGCGGAGGAATTAGGGTTTACGCTTTCTTCGATTGAGAAATTGGGGGTTTTCTCAAAAGCTGAGGAGTTAGGGCTTCTTAGCTTGCTTGAGAAAGTTGCGAGCTCTTCTCCGTCGGCTTTGGCTTCTCTTGCTCTTCCCATTCTCGTGGCGGCACTGGCGGCGATTGTTATCATTCCCGATGACTCGGTGGCGCTTGTAGTGTTGCAGGCGGTGGTCGGTGGCGGACTGGCGCTTGGGGCTGCCGGATTGTTCGTTGGATCGGTGGTGCTGGGTGGGTTGCAGGAAGCTGATTGA 606 53.3 MAVTSQSPSSSAATAAPSHLPNRFSISRFRHVSNHARPSRSNPLTIVAMAPQKKVNKYDGAWEKKWFGAGIFYESAEDVEVDVFKKLEKKKVLSNVEKAGLLSKAEELGFTLSSIEKLGVFSKAEELGLLSLLEKVASSSPSALASLALPILVAALAAIVIIPDDSVALVVLQAVVGGGLALGAAGLFVGSVVLGGLQEAD 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2702993 2704604 - Lsi02G003150.1 Lsi02g00315 655057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00315 201 Pfam Protein of unknown function (DUF1118) 86 200 IPR009500 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00315 - - - csv:101214681 248.054
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00122 Lsi-Chr2:1012292 Lsi02g00315 Lsi-Chr2:2702993 2.67E-08 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g501 . Blo16g00196 . . . Bpe13g00276 Bma06g00185 . Cmo13g00957 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00315 Csa01g00792 Chy12g01324 Cme12g01749 . . Bda11g01687 . . . . . Sed01g1833 . . Cma13g00929 . Car13g00768 . . . Bhi08g01416 Tan05g2082 Cmetu12g1516 Lac10g0373 Hepe07g2282 . . Cla01g01423 Cam01g1490 Cec01g1531 Cco01g1576 Clacu01g1514 Cmu01g1406 Cre01g1324 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011008 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00315 Lsi_Chr02 FPKM 23.642424 24.377373 27.618567 28.611807 22.291544 20.183191 26.411526 23.684902 22.268093 25.07036