Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00316 ATGGCGGGTCGGAGGGTCTACGGCGGTGGCGGTGGTGGCGACGACGGTGGTAGTATAAGTGGTGGTTCTTCTAATCATAGTGTTTTGCTTCAGAATCGTGGAGGGTCTTTTGCTTCTGAGCCTCTTAATGCTCTGTTCCTTTCTGGGTCATCTTCTTCTACTTCCCCTTCTCTGCTTGGTTCAAGATCCATGATGAGTTTCGAAGATATTCGTGGAGGAAATGGATCGAATAGATCGTTCTTTTGCCCGTTCGATAGTGAAGATAATGGGGATGAAGACTTGGACGATTACTTTCATCACCCTGAAAAAAAGAGGCGTTTAACTGTTGATCAAGTCCGGTTCCTCGAGAAAAGTTTCGAGACCGAGAACAAGCTTGAACCGGAAAGGAAAGTTCAATTAGCAAAGGACCTCGGGCTGCAGCCTCGTCAGGTTGCTATATGGTTTCAAAATCGCCGAGCTCGGTGGAAAACTAAACAGCTGGAGAAGGACTATGAGGCTCTTCAATCCAGCTATGGAAGCCTTAAGGTTGACTATGAAAACCTACTCAAGGAGAATGATTCACTAAAAGCTGAGATTCTTCTCCTAACAGACAAACTGCTACACAAAGAAAAAGAAATAGGAAACTCTGTGCTGTCTGAAGTTGACAAATTTGGTGAAGAACCACCACATAATCTGGTTGCTGATTCACATTTGGAGGATGAAGTCTCCAAATCTTCAAAGCTGGGTTGTAAGCAAGAGGATATCAGTTCAGTCAAAAGTGATATATTTGATTCAGATAGCCCACACTACACTGATGGGGTTCACTCTTCAATCCTAGAGCCTGGAGATTCTTCCTATATTTTCGATCCCGATCAGTCCGACTTATCGCAGGACGAAGAAGATAACTTGGGAAAGAATCTATTGCCCCCTTACATCTTCCCCAAGCTCGAAGATGTCGATTACTCTGACCCGCCCACAAGTTCTTGTAATTTTGTATTCCCCATTGAAGACAATGCCCTTTGGTCCTGGTCTTAG 1014 44.58 MAGRRVYGGGGGGDDGGSISGGSSNHSVLLQNRGGSFASEPLNALFLSGSSSSTSPSLLGSRSMMSFEDIRGGNGSNRSFFCPFDSEDNGDEDLDDYFHHPEKKRRLTVDQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVDYENLLKENDSLKAEILLLTDKLLHKEKEIGNSVLSEVDKFGEEPPHNLVADSHLEDEVSKSSKLGCKQEDISSVKSDIFDSDSPHYTDGVHSSILEPGDSSYIFDPDQSDLSQDEEDNLGKNLLPPYIFPKLEDVDYSDPPTSSCNFVFPIEDNALWSWS 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2714297 2716383 + Lsi02G003160.1 Lsi02g00316 655058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00316 337 SMART HOX_1 101 162 IPR001356 GO:0003677
Lsi02g00316 337 ProSiteProfiles 'Homeobox' domain profile. 98 158 IPR001356 GO:0003677
Lsi02g00316 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 335 IPR045224 GO:0003700
Lsi02g00316 337 CDD homeodomain 103 159 IPR001356 GO:0003677
Lsi02g00316 337 SUPERFAMILY Homeodomain-like 86 160 IPR009057 -
Lsi02g00316 337 Coils Coil 171 198 - -
Lsi02g00316 337 Pfam Homeodomain 103 156 IPR001356 GO:0003677
Lsi02g00316 337 PRINTS Lambda-repressor HTH signature 138 154 IPR000047 GO:0003677
Lsi02g00316 337 PRINTS Lambda-repressor HTH signature 129 138 IPR000047 GO:0003677
Lsi02g00316 337 MobiDBLite consensus disorder prediction 1 26 - -
Lsi02g00316 337 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 26 335 - -
Lsi02g00316 337 Pfam Homeobox associated leucine zipper 158 199 IPR003106 GO:0006355|GO:0043565
Lsi02g00316 337 ProSitePatterns 'Homeobox' domain signature. 133 156 IPR017970 GO:0000981|GO:0006355
Lsi02g00316 337 Gene3D - 98 165 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00316 - - - bhj:120083292 610.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00792 Lsi-Chr1:6210199 Lsi02g00316 Lsi-Chr2:2714297 3.48E-41 dispersed
Lsi02g00316 Lsi-Chr2:2714297 Lsi03g01401 Lsi-Chr3:24962142 8.89E-46 dispersed
Lsi02g00316 Lsi-Chr2:2714297 Lsi02g01495 Lsi-Chr2:20804999 2.74E-39 wgd
Lsi02g00316 Lsi-Chr2:2714297 Lsi04g00464 Lsi-Chr4:4399988 5.99E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24752 PF00046 Homeodomain 1.00E-16 CL0123 Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00316 Lsi_Chr02 FPKM 2.22549 2.181574 0.307291 0.284488 9.059061 9.556543 10.744797 0.147386 0.23347 0.124712