Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00317 ATGAGCCTGCAATTGAAGCCAATTCATCACCACCTCCACCACCGTGGCCGCCGCCATTGCCACAGTCAGGAGCCGTATCAACCCAGCTACAGAGTACAAATTCAAGCCCCATCGGCATCTCTGCACCTGAACCATTCATTCATTTCTTTGCTGCCGAATTGCCATTCATTGAATGGAAAACGAGGGATTTCAACAGAAGGGTCCGTTAGGTCGTTGGGATTATTGAACGTTAGGAGGAGACGAAGCCGAGACAGTGGCCGAATCGGTCACCGGAGTATTGTGGCATCCGGCATTGCTGGGACACCGATTTCAGATGCATCGAAACCAGACAAAGGCTTTGTTTCTCCTCCCCTCAGTGACATCCTTTGGCCTTCTGCAGGGGCATTTGCAGCAATGGCAATGCTGGGGAAAATGGATCAGATTCTAGCGCCAAAGGGACTTTCAATGACAATTGCACCACTAGGAGCCGTTTGTGCTGTTCTGTTCGCAACACCCTCATCCCCTGCTGCTCGAAAATACAATATGTTCATGGCCCAGATTGGGTGTGCGGCAATTGGGGTCTTAGCGTTTACTTTGTTGGGACCTGGATGGCTGGCTAGAAGCTCTGCTCTGGCTGCATCCATGGCGTTTATGCTCTATACTGGTTCGACGCATCCACCAGCTGCAAGTTTGCCGATACTGTTCATCGATGGAGCTAAGATGCAACAGCTGAATTTCTGGTACGCTCTGTTTCCTGGCGCCGCTGGATGTATTCTTCTTTGCTTGATAGCTTGGAGCCTTGGGTGGTACATGAAACTCAACCTATCTATTAGTGAAATTCAACCAAATGCACTTATTTCATATGGCATGTCTACTTATTAA 861 49.13 MSLQLKPIHHHLHHRGRRHCHSQEPYQPSYRVQIQAPSASLHLNHSFISLLPNCHSLNGKRGISTEGSVRSLGLLNVRRRRSRDSGRIGHRSIVASGIAGTPISDASKPDKGFVSPPLSDILWPSAGAFAAMAMLGKMDQILAPKGLSMTIAPLGAVCAVLFATPSSPAARKYNMFMAQIGCAAIGVLAFTLLGPGWLARSSALAASMAFMLYTGSTHPPAASLPILFIDGAKMQQLNFWYALFPGAAGCILLCLIAWSLGWYMKLNLSISEIQPNALISYGMSTY 286
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2726016 2727396 - Lsi02G003170.1 Lsi02g00317 655059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00317 286 MobiDBLite consensus disorder prediction 1 24 - -
Lsi02g00317 286 Pfam HPP family 151 259 IPR007065 -
Lsi02g00317 286 PANTHER BNAA06G16970D PROTEIN 64 268 - -
Lsi02g00317 286 PANTHER TRANSMEMBRANE PROTEIN DDB_G0269096-RELATED 64 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00317 - - - csv:105434855 410.994
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g498 Blo04g00757 . . . . . . . Cmo13g01186 Cmo18g00099 . . . . . Cpe20g00204 . . . . . . . . . . . . . . . . Cone16ag0146 . . Lsi02g00317 Csa01g00794 Chy12g01322 Cme12g01747 . . . . . . Bma03g00812 . Sed08g2571 . . Cma13g01131 Cma18g00129 Car13g00964 Car18g00120 Cpe09g01064 . Bhi08g01419 Tan05g2078 Cmetu12g1270 Lac10g0376 Hepe07g2280 . . Cla01g01421 Cam01g1488 Cec01g1527 Cco01g1574 Clacu01g1512 Cmu01g1404 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010086 0 1 1 1 0 1 4 1 1 1 1 1 2 1 1 2 1 1 2 0 1 1 1 1 0 1 0 3 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00317 Lsi_Chr02 FPKM 5.731433 5.479423 5.925275 6.955694 7.503146 7.143833 8.026359 6.01072 6.039228 6.822189