Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00318 ATGGGCATGTTTGTTTTGGTTGTTTCATCGCTTTTACTATCAACCCTTTTCAGCCCTTGCACTTTTGCTCTCACTCCAGATGTTCTTCATTTCACAGGCTTAACGTTGTTGGAAATTAGGAGCGCGTTTAATGATAGCAGAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTTTCCCTGCAAATGGTCTGGTATATCTTGTCATCCCGAGGACCAAAGGGTTAGCTCAATTAACTTACCTTACATGCAACTTGGAGGGATCATTTCTCCCAGCATTGGTAAACTCGGTAGATTACAAAGACTGGCACTTCACGAGAATGGCTTACATGGGAATATTCCTAACGAAATCACTGAATGTACTCAGCTCAGAGCTCTGTATTTGAGGTCTAATTATCTCCAAGGTGGCATACCGTCGGATATTGGAAACCTTTCTGCTCTTACAATACTGGATTTGTCAAGCAATTCCTTAAAGGGTGCTATTCCATCATCCATTGGTCGTCTCTCGCTTCTGCGTCATTTGAATTTGTCCATAAACTTTTTCTCTGGCGCAATACCTGATTTTGGAGTTCTAAGCACATTTGGAAGCAATTCGTTCATTGGCAATCCAGATCTCTGTGGTCATCAAGTTAACAAGGCTTGCCGAACCTCACTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCCGTTCCTGTGAAAAAATCTTCACACTACATCAAAGGGGTATTAATTGGTGCAATGTCCACTATGGGTGTTGCACTTGTAGTGCTTGTTCCATTTTTGTGGATACGGTGGCTATCAAAGAAGGAAAGAGCTGCCAAGAGATACACTGAAGTAAAAAAGCAAGTGGTTCATGAACCAAGCACAAAACTTATTACTTTTCACGGTGACCTACCGTACCCATCATGTGAGATCATAGAAAAGCTGGAGTCACTAGATGAAGAAGATGTTGTCGGTTCAGGAGGATTTGGTATTGTATACCGAATGGTCATGAATGATTGTGGAACATTTGCTGTGAAAAAGATTGATGGAAGCAGAAAAGGTTCAGATCAAGTGTTTGAGAGAGAGTTGGAGATTTTGGGTTGCATCAAACATATAAACTTGGTCAATTTGCGGGGATACTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGATTTTCTAGCAATGGGCAGCTTAGATGATTTCTTGCACGAACATGGACCAGAAAAACAGCCTTTGGATTGGAGAGCTCGTCTAAGAATAGCCTTTGGCTCTGCTAGGGGGATTGCATACTTGCATCATGATTGTTGTCCAAATATCGTGCATCGTGATATTAAATCAAGTAACATTCTACTCGATGAAAACTTGGAGCCCCATGTATCTGACTTTGGACTGGCCAAGCTTTTGGTTGACGACGATGCTCATGTCACAACTGTTGTTGCTGGAACGTTTGGTTATTTGGCTCCAGAATACCTACAAAGTGGGAGGGCAACCGAAAAATCAGATGTTTATAGCTTTGGAGTTTTATTACTGGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGCGAGGCTTAAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAAATGGATGAGATAGTTGACAAAAGGTGTAAGGACGTCGATGCTGATACTGTAGAAGCAATTCTCGAAATAGCAGCCAAATGCACGGATGCTGACCCAGACAATCGGCCGTCAATGAGTCAAGTCTTACAGTTTCTTGAGCAAGAAGTCATGTCACCTTGTCCTAGTGATTTCTATGAGTCTCAGTCTGATTATTCTTGA 1821 42.17 MGMFVLVVSSLLLSTLFSPCTFALTPDVLHFTGLTLLEIRSAFNDSRNLLGDWEASDEFPCKWSGISCHPEDQRVSSINLPYMQLGGIISPSIGKLGRLQRLALHENGLHGNIPNEITECTQLRALYLRSNYLQGGIPSDIGNLSALTILDLSSNSLKGAIPSSIGRLSLLRHLNLSINFFSGAIPDFGVLSTFGSNSFIGNPDLCGHQVNKACRTSLGFPAVLPHAESDEASVPVKKSSHYIKGVLIGAMSTMGVALVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPSTKLITFHGDLPYPSCEIIEKLESLDEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEHGPEKQPLDWRARLRIAFGSARGIAYLHHDCCPNIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDDDAHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKMDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDFYESQSDYS 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2728480 2733244 - Lsi02G003180.1 Lsi02g00318 655060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00318 606 Pfam Protein kinase domain 318 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00318 606 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 39 598 - -
Lsi02g00318 606 SUPERFAMILY Protein kinase-like (PK-like) 296 587 IPR011009 -
Lsi02g00318 606 SMART serkin_6 316 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00318 606 ProSitePatterns Protein kinases ATP-binding region signature. 322 345 IPR017441 GO:0005524
Lsi02g00318 606 SUPERFAMILY L domain-like 34 189 - -
Lsi02g00318 606 Gene3D Ribonuclease Inhibitor 33 216 IPR032675 -
Lsi02g00318 606 Gene3D Transferase(Phosphotransferase) domain 1 392 596 - -
Lsi02g00318 606 Pfam Leucine rich repeat N-terminal domain 34 68 IPR013210 -
Lsi02g00318 606 Gene3D Phosphorylase Kinase; domain 1 275 391 - -
Lsi02g00318 606 ProSiteProfiles Protein kinase domain profile. 316 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00318 606 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 39 598 - -
Lsi02g00318 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00318 Lsi06g01488 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00318 Lsi-Chr2:2728480 Lsi07g00757 Lsi-Chr7:8257843 5.49E-146 dispersed
Lsi02g00812 Lsi-Chr2:7570866 Lsi02g00318 Lsi-Chr2:2728480 4.37E-46 transposed
Lsi02g02183 Lsi-Chr2:28323883 Lsi02g00318 Lsi-Chr2:2728480 6.07E-92 transposed
Lsi04g01967 Lsi-Chr4:26728233 Lsi02g00318 Lsi-Chr2:2728480 2.85E-99 transposed
Lsi07g00387 Lsi-Chr7:4135304 Lsi02g00318 Lsi-Chr2:2728480 2.66E-41 transposed
Lsi07g00755 Lsi-Chr7:8251909 Lsi02g00318 Lsi-Chr2:2728480 1.08E-21 transposed
Lsi07g00756 Lsi-Chr7:8257298 Lsi02g00318 Lsi-Chr2:2728480 2.00E-20 transposed
Lsi07g01343 Lsi-Chr7:19607203 Lsi02g00318 Lsi-Chr2:2728480 3.34E-67 transposed
Lsi02g00318 Lsi-Chr2:2728480 Lsi06g01488 Lsi-Chr6:25343556 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83346 PF00069 Pkinase 7.40E-47 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00318 - - csv:101219279 1138.64