Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00322 ATGGGGGAAAAGCCAGAAGTGTTGGAGGCTGTATTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGGTGCTGAGGAAAGGCTGAAGATTTTTGGGCACAATAAGCTTGAGGAAAAGAAGGAAAGCAAATTTTTGAAGTTTTTGGGTTTTATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCCGACTGGCAAGATTTTGTTGGTATCATTACCCTGCTTATCATTAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGTCTGCGCTTACAGGTGAATCTCTCCCTGTAACGAAGGGTCCTGGTGATGGTGTGTACTCTGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCCGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAATCAAATTCTAAATCTTGCTTACAACAAGTCGGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTTTGCGTTCACTTGCTGTAGCATATCAGGAAGTTCTAGAAGGAAAAAAAGAAAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTACCTTTATTTGATCCACCAAGACATGATAGTGCAGAGACAATTAGGAGAGCTTTAAATCTTGGCGTAAACGTGAAAATGATTACCGGAGATCAGCTGGCTATAGGCAAGGAAACGGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTAGGACAGGAAAAAGATGAGTCCATTGCTGCTTTACCTGTTGACGACCTTATAGAAAAAGCAGATGGTTTTGCGGGTGTATTCCCTGAGCACAAATACGAGATTGTAAAACGCTTGCAAGCTATGAAACATATATGTGGGATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGGAGTGCTTCTGATATTGTTCTTACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTTTTGACTAGTAGAGCAATATTTCAGAGGATGAAGAATTACACGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGTACAATCATGACAATATCAAAAGATAGGGTTAAACCATCTCCTTTACCAGATAGTTGGAAGCTGGCTGAAATTTTTACTACTGGGATCGTACTTGGTAGTTACCTGGCAATGATGACGCGAGTCTTTGGAGTACCAACCCTTGAAAAAACAGCTCACGATGATTTCCGAAAGCTAGCCTCAGCTATATATTTGCAAGTGAGCACTATCAGTCAGGCTCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTACGTCGAGCGTCCTGGAGTATTTCTTATAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTCTGATTGCTGTTTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTTTAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTAAGTGGAAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACGTGAGCTGCAATGGGCTCACGCACAAAGAACGCTACACGGTTTGCAACCGCCTGATACTAAGATGTTCACCGAGCGAACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGAAGCAGAAAGAAGCATGGCGACAATGTTAGGTGCCATGCCAATACCTATCCTTTCTTAGAAGTGGTCTGCCACTTCATTTTCAGGGAATCTAGAGAAAGTTGGCAAATCCTAAATCTTGTAGTGGACAAAGTAAGTATCAGAAAGGAAAGCTCCAATCAAGGTTGTGAAGCTGCTGGTTCCATTAAAGGTGTTGACAAGATTGGTTACAGTTATGGCTTTCAGATGAAAGTGAAACACAAAAGTGAAGTTACCAATAGGTTTGATGTTGTCTCAATTGTTCCCAGTCTCTCAAATATCTCATTTCCTGCAGCATTTTGTCGTTAA 2301 42.37 MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEGAEERLKIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQILNLAYNKSEIERKVHAVIDKFAERGLRSLAVAYQEVLEGKKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGVFLIVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLFNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARSRKKHGDNVRCHANTYPFLEVVCHFIFRESRESWQILNLVVDKVSIRKESSNQGCEAAGSIKGVDKIGYSYGFQMKVKHKSEVTNRFDVVSIVPSLSNISFPAAFCR 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2742661 2752315 - Lsi02G003220.1 Lsi02g00322 655064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00322 766 PANTHER CALCIUM-TRANSPORTING ATPASE 190 670 - -
Lsi02g00322 766 Pfam E1-E2 ATPase 137 213 - -
Lsi02g00322 766 PANTHER PLASMA MEMBRANE ATPASE 1 3 137 - -
Lsi02g00322 766 PANTHER CALCIUM-TRANSPORTING ATPASE 3 137 - -
Lsi02g00322 766 Coils Coil 641 661 - -
Lsi02g00322 766 PRINTS H+-transporting ATPase (proton pump) signature 206 224 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00322 766 PRINTS H+-transporting ATPase (proton pump) signature 380 405 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00322 766 PRINTS H+-transporting ATPase (proton pump) signature 321 337 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00322 766 PRINTS H+-transporting ATPase (proton pump) signature 500 521 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00322 766 PRINTS H+-transporting ATPase (proton pump) signature 349 365 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00322 766 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Lsi02g00322 766 Gene3D - 140 187 - -
Lsi02g00322 766 Gene3D - 639 669 - -
Lsi02g00322 766 PANTHER PLASMA MEMBRANE ATPASE 1 137 192 - -
Lsi02g00322 766 Gene3D - 68 139 - -
Lsi02g00322 766 Gene3D - 349 586 - -
Lsi02g00322 766 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 324 421 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lsi02g00322 766 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Lsi02g00322 766 SUPERFAMILY Calcium ATPase, transduction domain A 137 186 IPR008250 -
Lsi02g00322 766 Pfam haloacid dehalogenase-like hydrolase 223 363 - -
Lsi02g00322 766 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 200 255 IPR023299 GO:0000166
Lsi02g00322 766 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 587 IPR023298 -
Lsi02g00322 766 Gene3D - 188 256 IPR023299 GO:0000166
Lsi02g00322 766 SUPERFAMILY HAD-like 241 395 IPR036412 -
Lsi02g00322 766 PANTHER CALCIUM-TRANSPORTING ATPASE 137 192 - -
Lsi02g00322 766 PANTHER PLASMA MEMBRANE ATPASE 1 190 670 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00322 Lsi06g01491 CCT
Lsi02g00322 Lsi06g01491 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00322 Lsi-Chr2:2742661 Lsi07g00437 Lsi-Chr7:4655089 0 dispersed
Lsi02g00322 Lsi-Chr2:2742661 Lsi02g01502 Lsi-Chr2:20847413 0 wgd
Lsi02g00322 Lsi-Chr2:2742661 Lsi06g01491 Lsi-Chr6:25366643 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00322 K01535 - csv:101214920 871.307