Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00322 | ATGGGGGAAAAGCCAGAAGTGTTGGAGGCTGTATTGAAGGAAGCTGTGGATTTGGAAAATATACCCATTGATGAGGTTTTTGAAAATCTGAGATGTAGCAAAGAGGGTCTTACCAGTGAGGGTGCTGAGGAAAGGCTGAAGATTTTTGGGCACAATAAGCTTGAGGAAAAGAAGGAAAGCAAATTTTTGAAGTTTTTGGGTTTTATGTGGAATCCTCTATCATGGGTTATGGAAGCTGCTGCAATTATGGCTATTGCACTTGCAAATGGAGGAGGAAAGCCCCCCGACTGGCAAGATTTTGTTGGTATCATTACCCTGCTTATCATTAACTCCACAATCAGTTTTATTGAGGAAAACAATGCAGGAAACGCTGCAGCTGCTCTCATGGCTCGTCTTGCTCCCAAAGCCAAGTCTGCGCTTACAGGTGAATCTCTCCCTGTAACGAAGGGTCCTGGTGATGGTGTGTACTCTGGTTCTACTTGCAAGCAAGGAGAGATTGAAGCCGTGGTCATTGCTACTGGTGTCCACACCTTTTTTGGTAAAGCTGCTCATCTTGTTGACACCACCAATCAAATTCTAAATCTTGCTTACAACAAGTCGGAGATTGAGAGAAAAGTTCATGCAGTGATTGATAAATTTGCTGAACGAGGTTTGCGTTCACTTGCTGTAGCATATCAGGAAGTTCTAGAAGGAAAAAAAGAAAGTGCTGGAGGTCCTTGGCAATTCATGGGCCTCTTACCTTTATTTGATCCACCAAGACATGATAGTGCAGAGACAATTAGGAGAGCTTTAAATCTTGGCGTAAACGTGAAAATGATTACCGGAGATCAGCTGGCTATAGGCAAGGAAACGGGACGTCGATTGGGGATGGGAACCAACATGTATCCATCATCTGCTTTGCTAGGACAGGAAAAAGATGAGTCCATTGCTGCTTTACCTGTTGACGACCTTATAGAAAAAGCAGATGGTTTTGCGGGTGTATTCCCTGAGCACAAATACGAGATTGTAAAACGCTTGCAAGCTATGAAACATATATGTGGGATGACTGGTGATGGAGTGAATGATGCTCCTGCACTTAAAAAAGCAGACATAGGTATAGCTGTTGCAGATGCAACTGATGCTGCTCGGAGTGCTTCTGATATTGTTCTTACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTTTTGACTAGTAGAGCAATATTTCAGAGGATGAAGAATTACACGCTTGGTTTCATGTTGCTGGCTCTCATTTGGAAATTTGATTTTCCACCATTTATGGTGCTTATCATTGCTATCCTTAATGATGGTACAATCATGACAATATCAAAAGATAGGGTTAAACCATCTCCTTTACCAGATAGTTGGAAGCTGGCTGAAATTTTTACTACTGGGATCGTACTTGGTAGTTACCTGGCAATGATGACGCGAGTCTTTGGAGTACCAACCCTTGAAAAAACAGCTCACGATGATTTCCGAAAGCTAGCCTCAGCTATATATTTGCAAGTGAGCACTATCAGTCAGGCTCTCATTTTTGTTACGCGATCTCGAAGTTGGTCCTACGTCGAGCGTCCTGGAGTATTTCTTATAGTGGCTTTTATTCTTGCTCAACTGGTTGCCACTCTGATTGCTGTTTATGCTAATTGGAGTTTTGCTGCCATTGAAGGAATTGGTTGGGGTTGGGCTGGTGTAATTTGGCTTTTTAACATCATCTTTTATATTCCTCTTGATCCCATAAAGTTTGCTATTCGATATGCTTTAAGTGGAAAGGCTTGGGATCTCATGCTTGAGCAAAGGGTTGCTTTCACAAGACAAAAGGATTTCGGTAAGGAACAACGTGAGCTGCAATGGGCTCACGCACAAAGAACGCTACACGGTTTGCAACCGCCTGATACTAAGATGTTCACCGAGCGAACTCATTTCACAGAACTCAATCACATGGCTGAAGAAGCCAAAAGGAGAGCTGAAATTGCTAGAAGCAGAAAGAAGCATGGCGACAATGTTAGGTGCCATGCCAATACCTATCCTTTCTTAGAAGTGGTCTGCCACTTCATTTTCAGGGAATCTAGAGAAAGTTGGCAAATCCTAAATCTTGTAGTGGACAAAGTAAGTATCAGAAAGGAAAGCTCCAATCAAGGTTGTGAAGCTGCTGGTTCCATTAAAGGTGTTGACAAGATTGGTTACAGTTATGGCTTTCAGATGAAAGTGAAACACAAAAGTGAAGTTACCAATAGGTTTGATGTTGTCTCAATTGTTCCCAGTCTCTCAAATATCTCATTTCCTGCAGCATTTTGTCGTTAA | 2301 | 42.37 | MGEKPEVLEAVLKEAVDLENIPIDEVFENLRCSKEGLTSEGAEERLKIFGHNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQILNLAYNKSEIERKVHAVIDKFAERGLRSLAVAYQEVLEGKKESAGGPWQFMGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQEKDESIAALPVDDLIEKADGFAGVFPEHKYEIVKRLQAMKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGIVLGSYLAMMTRVFGVPTLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRSWSYVERPGVFLIVAFILAQLVATLIAVYANWSFAAIEGIGWGWAGVIWLFNIIFYIPLDPIKFAIRYALSGKAWDLMLEQRVAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHFTELNHMAEEAKRRAEIARSRKKHGDNVRCHANTYPFLEVVCHFIFRESRESWQILNLVVDKVSIRKESSNQGCEAAGSIKGVDKIGYSYGFQMKVKHKSEVTNRFDVVSIVPSLSNISFPAAFCR | 766 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2742661 | 2752315 | - | Lsi02G003220.1 | Lsi02g00322 | 655064 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00322 | 766 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 190 | 670 | - | - | |
Lsi02g00322 | 766 | Pfam | E1-E2 ATPase | 137 | 213 | - | - | |
Lsi02g00322 | 766 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 3 | 137 | - | - | |
Lsi02g00322 | 766 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 3 | 137 | - | - | |
Lsi02g00322 | 766 | Coils | Coil | 641 | 661 | - | - | |
Lsi02g00322 | 766 | PRINTS | H+-transporting ATPase (proton pump) signature | 206 | 224 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g00322 | 766 | PRINTS | H+-transporting ATPase (proton pump) signature | 380 | 405 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g00322 | 766 | PRINTS | H+-transporting ATPase (proton pump) signature | 321 | 337 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g00322 | 766 | PRINTS | H+-transporting ATPase (proton pump) signature | 500 | 521 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g00322 | 766 | PRINTS | H+-transporting ATPase (proton pump) signature | 349 | 365 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g00322 | 766 | SMART | Cation_ATPase_N_a_2 | 17 | 89 | IPR004014 | - | |
Lsi02g00322 | 766 | Gene3D | - | 140 | 187 | - | - | |
Lsi02g00322 | 766 | Gene3D | - | 639 | 669 | - | - | |
Lsi02g00322 | 766 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 137 | 192 | - | - | |
Lsi02g00322 | 766 | Gene3D | - | 68 | 139 | - | - | |
Lsi02g00322 | 766 | Gene3D | - | 349 | 586 | - | - | |
Lsi02g00322 | 766 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 324 | 421 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Lsi02g00322 | 766 | Pfam | Cation transporter/ATPase, N-terminus | 20 | 83 | IPR004014 | - | |
Lsi02g00322 | 766 | SUPERFAMILY | Calcium ATPase, transduction domain A | 137 | 186 | IPR008250 | - | |
Lsi02g00322 | 766 | Pfam | haloacid dehalogenase-like hydrolase | 223 | 363 | - | - | |
Lsi02g00322 | 766 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 200 | 255 | IPR023299 | GO:0000166 | |
Lsi02g00322 | 766 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 17 | 587 | IPR023298 | - | |
Lsi02g00322 | 766 | Gene3D | - | 188 | 256 | IPR023299 | GO:0000166 | |
Lsi02g00322 | 766 | SUPERFAMILY | HAD-like | 241 | 395 | IPR036412 | - | |
Lsi02g00322 | 766 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 137 | 192 | - | - | |
Lsi02g00322 | 766 | PANTHER | PLASMA MEMBRANE ATPASE 1 | 190 | 670 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Lsi02g00322 | Lsi06g01491 | CCT | |
Lsi02g00322 | Lsi06g01491 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00322 | Lsi-Chr2:2742661 | Lsi07g00437 | Lsi-Chr7:4655089 | 0 | dispersed | |
Lsi02g00322 | Lsi-Chr2:2742661 | Lsi02g01502 | Lsi-Chr2:20847413 | 0 | wgd | |
Lsi02g00322 | Lsi-Chr2:2742661 | Lsi06g01491 | Lsi-Chr6:25366643 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00322 | K01535 | - | csv:101214920 | 871.307 |