Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00327 ATGGGACCAAGAGTTCCTCTATCTGATGCTTCTACTAGTGGTATTGCATCATCCTCAAATATGGAGCCAGAGGATGTTCCCTTGGCTGTACCTCCACCTCCCCCACCCCCTCCTTTGCCAGACTCTACTAAGTTGGGTTCTGCTGATGGTCCTGCTCTACCTGATTCCTTACCTTTACCTCCTCCACCTCCATTGCCACCTAAGCCTGTAGCACCAAACTTGGGTTTACTGTTGCCTCCACCACCTCCTGGACCTCCACCAAGGGAACAAGTTGCAGGTCGACCTCCCTTTTTGCTGCCTCCATCTTTGCAGCAGTCTACTATGATGCTCCCTACTGGAGCCAGTGAAGGTGAAAAGGAGAGAAGTCAGTCTGCATTTTTGGATGATTCAACCTCCAAGGTGCCAGCTCAGGTACCTACTACTCTCCCGCCGCCTCCTCCCCCACCTGGGATGCCACCAAAGTCAGCAACTGATCAATCTGAAGGTGTATCAGGGGATGAGGAGACAAATAATTCTTCAGTGACTAAAGATGTTTCTAAACTGGTTCCTCCACCTCCACCTCCAAGACCTCCTCCAGTACCTGGGCCTTCATTGATACCAACCTTGCAGCCTGATGTATTACCCCCTGGAATATCTCGATTTCCCCCACCTCCACCTCCACCAGATATGCGGCCAACATTACCCGCACCTGGAGTCCCACTCCCTCCTGGAATGATGGTCCCGTTAATGCCAAGGACACCATTTGGGCCTCCCCTTGGACCTCCACCCATGATGAGACCACCTCTTCCTCCTGGTCCTCCTCCCATTTTTCTTGAAGATGACCATAATGCACATATGCCACCTGTCCCTCAAAAACCCTCGTATGTTAAATCTGCAGCATCTACTGTTGTTAAGCGCCCACTAGCTCAACACACTCCAGAACTTACAGCAATGGTTCCTGCATCAGTTAGAGTTAGAAGAGAGCTTGCAGCACCAAAAGCTAAACCGAAACCTTCTCCATCAACTACAGCAGCACCGTCCCTGCCCACAGCTCCTATTGTAGGGAAGCCAGAGCTGGTCGGCTCATCATCAGCCCCAAAGAAACCGAGCAGCAAGTGTAATCGAAAAGGAGGAGAAACAAATGGCTTGTACTTCTCAAGAACTGACGACAATATGGAGATGATGAGATCATTGCCTTCTGTCATCAAGGTTCTTCTGAAATTTGAAACTTTTGTTCTTTCGGTTCACTTTTTGGTGAAGTTGGTTCGGAGAACACTGGGTGGACCGTGGAACACAATGGCGATGGATTTTGCCTCACCAGTTAGCCATATCCAAATTCAATTCCCAGCTGAAAACCACTGGATTTCTCAACAACCCTATTCAATTAAACACAGGCGAGTGCAGGAAACATGTCGAAATCTCGATGAAGGAGATGCCTTATAA 1422 49.23 MGPRVPLSDASTSGIASSSNMEPEDVPLAVPPPPPPPPLPDSTKLGSADGPALPDSLPLPPPPPLPPKPVAPNLGLLLPPPPPGPPPREQVAGRPPFLLPPSLQQSTMMLPTGASEGEKERSQSAFLDDSTSKVPAQVPTTLPPPPPPPGMPPKSATDQSEGVSGDEETNNSSVTKDVSKLVPPPPPPRPPPVPGPSLIPTLQPDVLPPGISRFPPPPPPPDMRPTLPAPGVPLPPGMMVPLMPRTPFGPPLGPPPMMRPPLPPGPPPIFLEDDHNAHMPPVPQKPSYVKSAASTVVKRPLAQHTPELTAMVPASVRVRRELAAPKAKPKPSPSTTAAPSLPTAPIVGKPELVGSSSAPKKPSSKCNRKGGETNGLYFSRTDDNMEMMRSLPSVIKVLLKFETFVLSVHFLVKLVRRTLGGPWNTMAMDFASPVSHIQIQFPAENHWISQQPYSIKHRRVQETCRNLDEGDAL 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2823563 2827460 + Lsi02G003270.1 Lsi02g00327 655069

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00327 473 MobiDBLite consensus disorder prediction 1 232 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 322 373 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 26 42 - -
Lsi02g00327 473 PANTHER WW DOMAIN-BINDING PROTEIN 11 22 366 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 138 154 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 180 232 - -
Lsi02g00327 473 PRINTS Proline rich extensin signature 25 37 - -
Lsi02g00327 473 PRINTS Proline rich extensin signature 51 72 - -
Lsi02g00327 473 PRINTS Proline rich extensin signature 80 96 - -
Lsi02g00327 473 PRINTS Proline rich extensin signature 128 153 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 54 94 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 245 270 - -
Lsi02g00327 473 MobiDBLite consensus disorder prediction 157 178 - -
Lsi02g00327 473 PANTHER WW DOMAIN-BINDING PROTEIN 11 22 366 IPR019007 GO:0006396
Lsi02g00327 473 MobiDBLite consensus disorder prediction 245 275 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00327 - - - csv:101216276 384.415
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g480 . . Bda06g00559 Bda15g00585 Bpe12g00563 . . Bma12g01013 Cmo13g00948 Cmo18g00104 . . . . . Cpe20g00209 . . . . . . . . . . . . . . . . . Cone13ag0097 Cone19ag0100 Lsi02g00327 Csa01g00801 Chy12g01315 Cme12g01739 Blo13g00028 Blo15g00293 . . Bpe07g00802 . . . Sed08g2564 . . Cma13g00923 Cma18g00132 Car13g00760 Car18g00125 Cpe09g01059 . Bhi08g01427 Tan05g2070 Cmetu12g1524 Lac10g0391 Hepe07g2274 . . Cla01g01415 Cam01g1481 Cec01g1520 Cco01g1566 Clacu01g1504 Cmu01g1397 Cre01g1317 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0030478 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00327 Lsi_Chr02 FPKM 1.415182 2.077531 5.254013 5.71879 1.977816 2.540173 1.998601 3.411677 3.66793 4.406665