Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00331 ATGGAAGCGTATTTGAAGCATGTATTGAAGGAAGAGAGAGAAATCATGGTGAATCGGAGGCGGAGGAAGCTGTACACTAATGGAACACAGAAACATCCTCTATCGACTATGTGGAGTGCAGTTTACTTCGAGCATCCTGCAAGTTTTGACACATTTGACATGGATCCAGAGAAAAAACAAGAGATTATACAAGATTTACTTACATTTAGACAGAGTAAGGATTATTATGCTCGAATCGGTAAGGCGTGGAAACGAGGTTACCTTCTGTACGGCCCATCGGGGATAGGGAAATCGATGATGATTGCCGCCATGGCGAATTTTCTGAACTATGACATTTACGATTTGGAATTAACATCAGTGAAAGACAATACAGAGCTTCGGAAGCTTCTAATTGAGACAACGAGTAAATCCATAATCGCGATTGAAGACATCGATTGTACACTGAAACTCACGGGGAAAAGGAAAATCAAGAAAAAAGGAAGCTCAAATGAGGAGAAAGAGAAGGAGAAAGCAATTAAGGAACCGAAGAAAGAAGAAGAGGAGGTGAAAAGCAGAGTGACTTTGTCTGGATTGTTGAATTTCATCGACGGAATTTGGTCGGCGTGCGACGGAGAGAGGCTGATCATTTTCACAACAAATCACGCGGAGAAGCTTGATCCGACGTTGATTCGAAGAGGTAGAATGGACAAACACATTAAGCTTTCTTATTGTAGCTATGAAGCTTTCGAAGTTTTGGCTAAGAACTACTTGAATGTTGAAACGCATGAGCTTTTTGAGGTGATTAAAGAGCTAATTAAAGATGCAAAAATGATGCCGGCGGATGTTGCAGAAAATCTCATGCCGAAATCACAGCAAGAAGAGGCGGAGAATTCGCTTCGTAGGTTAATTGAGAGCCTAGAAGCTGAACAGAGTGGCGGAGGAGAAAAAGAAAAAGGAAAGGAATGCAAAAAAGCCAGAATATTCAACAGAAATTGTGGGTCTACTTTAGAGATAAACTCAGAGTTAAATTACAAGTTTGGTTCAACTTTCAAACGAGTTTGA 1041 40.73 MEAYLKHVLKEEREIMVNRRRRKLYTNGTQKHPLSTMWSAVYFEHPASFDTFDMDPEKKQEIIQDLLTFRQSKDYYARIGKAWKRGYLLYGPSGIGKSMMIAAMANFLNYDIYDLELTSVKDNTELRKLLIETTSKSIIAIEDIDCTLKLTGKRKIKKKGSSNEEKEKEKAIKEPKKEEEEVKSRVTLSGLLNFIDGIWSACDGERLIIFTTNHAEKLDPTLIRRGRMDKHIKLSYCSYEAFEVLAKNYLNVETHELFEVIKELIKDAKMMPADVAENLMPKSQQEEAENSLRRLIESLEAEQSGGGEKEKGKECKKARIFNRNCGSTLEINSELNYKFGSTFKRV 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2837788 2838828 - Lsi02G003310.1 Lsi02g00331 655073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00331 346 Gene3D - 39 232 IPR027417 -
Lsi02g00331 346 SMART AAA_5 83 238 IPR003593 -
Lsi02g00331 346 CDD AAA 84 236 - -
Lsi02g00331 346 Pfam ATPase family associated with various cellular activities (AAA) 88 235 IPR003959 GO:0005524|GO:0016887
Lsi02g00331 346 Gene3D - 233 300 - -
Lsi02g00331 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 286 IPR027417 -
Lsi02g00331 346 PANTHER BCS1 AAA-TYPE ATPASE 2 319 - -
Lsi02g00331 346 PANTHER ATP BINDING PROTEIN 2 319 - -
Lsi02g00331 346 MobiDBLite consensus disorder prediction 157 179 - -
Lsi02g00331 346 Coils Coil 282 302 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00331 - - - csv:101219757 446.817
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00331 Lsi-Chr2:2837788 Lsi02g00334 Lsi-Chr2:2852844 5.15E-143 dispersed
Lsi02g00329 Lsi-Chr2:2833625 Lsi02g00331 Lsi-Chr2:2837788 4.55E-169 proximal
Lsi02g00331 Lsi-Chr2:2837788 Lsi02g00332 Lsi-Chr2:2838918 1.33E-148 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g477 . . . . . . . . Cmo13g00944 . . . . . . Cpe20g00212 . . . . . . . . . . . . . . . . . . . Lsi02g00331 Csa01g00805 Chy12g01312 Cme12g01737 . . . . . . . . Sed08g2559 . . Cma13g00919 Cma18g00135 Car13g00758 Car18g00127 Cpe09g01057 . Bhi08g01431 Tan05g2065 Cmetu12g1057 Lac10g0394 Hepe07g2269 . . Cla01g01413 Cam01g1479 Cec01g1518 Cco01g1564 Clacu01g1502 Cmu01g1395 Cre01g1315 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013815 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 2 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00331 Lsi_Chr02 FPKM 1.840425 0.674493 18.320076 20.828012 9.103107 10.173581 10.113874 12.858309 14.949454 14.746165