Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00343 ATGGAGGAATCGAAAGCAGCGGCGTACTACGATGAGCTCACTCGTAAAGGAGAAGGAGCAGCAAGGTTCAAACGAGGCCTCGGTTTTTCCGCCTCCGACTCCAATAGCGACGTGGTCTCCACGTCCAAGGGTTCCGCTCTGCCTTCATCGTCTTCCTTCCTCAGTTCTTTTGTTAAAGCATCAAGCCCTTCCAAAGCCTCCGAGTTCGAAAAGCAAGCGCAGCTCGAGGCCATTCAGAACAAGCTCAAGAAGAAGAAACCAAGCTCTCCCGTTGGTGAAGAGAGGCGCCCTAGGGATTTGGAGAGAGATAGACGGAAATCGAGCCCTAGACGAAGGTCTTTGAGTAAAGAGAAGGAGAGACATTCGCATTCGAGGAGGCGGAGTTCGAGTAGAGATAGGGAGAGACATTCGAGGCGGCGAAGTAGGAGTCGAGATAGGTATGGGGATAAGTACAGGGATAGGGATAGAGAGAGGAGGAGGAGGAGAAGTAGGTCTAGGAGTGATTCAGATAGGGACCGGCGGCGTCGACGGAGTAGAAGCTTGTCGGTAGAGAGGAAGAGGTCGGACGACAATGGAAGTAAGGGAGGGGCCAAACAGAAAGACCGTAAAGTTGAAAGGCAGAAGACTGAAGGTGTTGATTATTCAAGATTGATTGAAGGATATGACATGATGTCTCCAGCTGAAAGAGTCAAAGCGAAGATGAAACTACAACTTGCTGAAACTGCCAGAATGGATGAAACAAAAGGCACAGGCCCAGGTTGGGAAAGGTTTGAGTTTGACAAGGATGCTCCGCTTGATGATGAAGAAATTGAAGCTGCAGAAGATGATGCAACATTAGTAAAGCATATTGGACAAAGCTTTCGATTTTCTGCAATTGAGGCTAGGAAAGAGGAGCAAATCAAAGCTGCTCATGACGAGGCCATGTTTGGAGCACCAGTGGGTCAATTGTTGAGTACAACTGATGATGAGGACGAGCTCGAGAATGAAAAGTCAAAGGAGTCATGCAACAGCGGTATGGCAACAAATCTATTGAGTGAAAAGATAATTGCAAAACAACAAGGTTCTTGGCGTGATCGTGCTCGTAAAGTTTAG 1092 47.99 MEESKAAAYYDELTRKGEGAARFKRGLGFSASDSNSDVVSTSKGSALPSSSSFLSSFVKASSPSKASEFEKQAQLEAIQNKLKKKKPSSPVGEERRPRDLERDRRKSSPRRRSLSKEKERHSHSRRRSSSRDRERHSRRRSRSRDRYGDKYRDRDRERRRRRSRSRSDSDRDRRRRRSRSLSVERKRSDDNGSKGGAKQKDRKVERQKTEGVDYSRLIEGYDMMSPAERVKAKMKLQLAETARMDETKGTGPGWERFEFDKDAPLDDEEIEAAEDDATLVKHIGQSFRFSAIEARKEEQIKAAHDEAMFGAPVGQLLSTTDDEDELENEKSKESCNSGMATNLLSEKIIAKQQGSWRDRARKV 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2927344 2932508 + Lsi02G003430.1 Lsi02g00343 655085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00343 363 MobiDBLite consensus disorder prediction 116 143 - -
Lsi02g00343 363 MobiDBLite consensus disorder prediction 29 69 - -
Lsi02g00343 363 MobiDBLite consensus disorder prediction 27 211 - -
Lsi02g00343 363 MobiDBLite consensus disorder prediction 144 211 - -
Lsi02g00343 363 MobiDBLite consensus disorder prediction 305 339 - -
Lsi02g00343 363 PANTHER SERINE/ARGININE-RELATED PROTEIN 53 1 363 IPR034604 GO:0000380|GO:0000398
Lsi02g00343 363 MobiDBLite consensus disorder prediction 77 115 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00343 - - - csv:101218261 445.277
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g679 Blo04g00748 . . . . . . . Cmo13g00938 . . . . . . Cpe20g00219 . . . . . . . . . . . . . . . Cone2ag0879 . . . Lsi02g00343 Csa01g00815 Chy12g01302 Cme12g01726 . . . Bda14g00827 . Bpe15g00624 Bma03g00801 . . . . Cma13g00911 . Car13g00751 . . . Bhi08g01444 . . . . . . Cla01g01401 Cam01g1463 Cec01g1505 . Clacu01g1487 Cmu01g1382 Cre01g1299 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012736 1 3 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00343 Lsi_Chr02 FPKM 0.0 0.0 1.856051 2.667169 1.399633 1.715874 0.59359 0.096024 0.0 0.0