Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00344 ATGGCTCCTTCCTCCAACCTTAGTCGATGGCTGAGGCCTGAGGTTTACCCACTTTTCGCGGCGGTAGGAGTGGCCGTCGGAATCTGCGGATTTCAGTTAGTCCGTAACATCTGCATCAATCCTGAAGTCAGGGTTTTCTTCTGCAACATAGAGAGTAGACCTTGCCAAGAGGATAGGTCAAGAGTGACCAAGGAGAATAGAGCCGCTGGAGTCCTGGATAACTTTGCTGAGGGAGAGAAGTATGCCGAACATTTCCTGAGGAAATTCGTGCGCAACAAGTCCCCAGAAATTATGCCATCCATCAACAACTTCTTCACTGACCCAAGTCGAAACTAA 336 49.11 MAPSSNLSRWLRPEVYPLFAAVGVAVGICGFQLVRNICINPEVRVFFCNIESRPCQEDRSRVTKENRAAGVLDNFAEGEKYAEHFLRKFVRNKSPEIMPSINNFFTDPSRN 111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2934038 2936227 + Lsi02G003440.1 Lsi02g00344 655086

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00344 111 PANTHER OS07G0274700 PROTEIN 55 110 - -
Lsi02g00344 111 PANTHER OS07G0274700 PROTEIN 6 46 - -
Lsi02g00344 111 PANTHER G-BOX BINDING PROTEIN 6 46 - -
Lsi02g00344 111 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 61 96 IPR010530 -
Lsi02g00344 111 Pfam NADH-ubiquinone reductase complex 1 MLRQ subunit 12 45 IPR010530 -
Lsi02g00344 111 PANTHER G-BOX BINDING PROTEIN 55 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00344 - - - csv:101218501 181.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00344 Lsi-Chr2:2934038 Lsi08g01611 Lsi-Chr8:24066698 5.36E-43 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g680 . . . . . . . . . . . . . . . Cpe20g00220 . . . . . . . . . . . . . . . . . Cone13ag0114 . Lsi02g00344 Csa01g00816 Chy12g01301 Cme12g01725 . . . . . Bpe15g00625 . . Sed08g2545 . . Cma13g00910 . Car13g00750 . . . Bhi08g01445 Tan05g2049 Cmetu12g0824 Lac10g0414 Hepe07g2257 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001710 2 3 1 3 2 2 1 1 2 3 1 1 3 3 2 2 1 3 4 2 3 3 2 0 2 2 3 4 3 2 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00344 Lsi_Chr02 FPKM 0.283828 0.0 6.623426 2.972957 1.953516 1.80166 0.786921 0.23567 0.458669 0.0