Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00346 ATGTTTCAAAGAAACATTAATCGAAGAGTAAAGAAGACGAAGACGAAGATTGTTTTTCTCCATCTTTGCCCACCAAAACCTAGCTTCTTCCTCTCATGTCGCAACTTCACTACCCAATCTAGCTCCGCCCTAGACACCGCCACCGCCGCCGCTGCCACAGATATCGCCAATCTTGTCCTCCAATCTGACCCCAAAAGCTTGAGAGGATCCCTCCATGGATTACAAGTTCAATTTACCCCTGAACTCGTGGACAAGGTTCTCAAGCGCCTATGGTTCCATGGACCGAAAGCGATGCAATTCTTCAAACACCTTGAGTACCATCCATCTTATGCCCATTCTTCGTCTTCCTTCGATCACGCCATCGACATTGCAGGCCGTATGCGCGACTACAAGACCGTATGGGCTCTTGTGGCTCGAATGCGAGCTCGCCGGATTGGACCCAGTTCAAAAACCTTCGCAATTATAGCTGAGAGGTTCGTCGGCGCTGGAAAACCAGACAGAGCGATCAAGGTTTTCTTGTCGATGCGGGAGCATGGCTGTCGTCAGGACTTGCATTCGTTCAACACCATTCTTGACATTCTCTGTAAGTCAAAACGTGTAGAAATGGCTTACAATCATCTGTTTAAAGTTTTGAGAGGAAAATTTAAGGCTGATGTTGTTAGTTATAACATAATTGCAAATGGGTGGTGTTTGATTAAGCGTACACCCAAAGCGTTGGAGGTCTTGAAGGAGATGGTGGAAAGAGGTTTAACTCCAACTATTACTACTTACAATATACTTTTAAAAGGGTATTTTAGAGCTGGTCAGATTAAGGAAGCTTGGGAATTCTTTTTGCAAATGAAAGAAAGGGAAGTTGAAATTGATGTTGTTACTTATACTACTATGGTTCATGGGTTTGGTGTTGTGGGTGAAATTAAAAGGGCTCAAAAGGTTTTCGACGAAATGGTTGGTGAAGGGATTCTTCCTTCAACAGCAACTTACAATGCTATGATACAGGTTTTGTGTAAGAAAGATAGTGTGGAGAATGCAGTATTGTTGTTTGAGGAGATGATTAAAAAGGGTTGTATGCCAAATTTGACCACTTATAACGTGGTTATAAGAGGATTGTGTCATGGGGGCAATATGGATAAGGCTATGGAGTTTATGGAGAGAATGAAAACTGATGGGTGTGAGCCAAACGTTCAGACATATAATGTCGCCATTCGGTATTTTTGTGATGCTGGTGACATAGAGAAGGGGTTGAATGTGTTTGAGAAGATGGGGCATGGAAGTTGTTTACCAAATTTGGATACGTATAATGTTTTGATTAGTGCAATGTTTGTGAGGAAAAAGTCTGAAGATTTAGTGGTTGCTGGGAAGTTGTTGCTTGAGATGATTGATAGAGGATTCCTCCCTCGAAAGTTCACTGTCAATCGAGTTCTCAATGGGCTTTTGCTGACGGTGCCTTCATTTGATTTTGTTGTGAAGCTGGTCACTTCAGAACCACTTCCATACTTCCTGAAGATGTCTAACCAGATTTTGAACTACACTTATGGATCCGGAGTGTTTGAATGGTTTATGGATGGACAAATCTGCGGCGGCGGCGGTGGTGACGGTGACGGCGACGACTTCATGGCGGCTCTGCCATCCTCTTCCGCTTTACCGGATTCTTCTTCCTCCAGACACCATACTTACAGTAGAAAGCAGAAATCCCTTGGTCTTTTATGTTCAAATTTTTTGAGCTTGTATAACCACGATGGAGTCCATTCGATTGGGCTTGACGATGCCGCAACGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTTTTGGAGAGCGTCGGGGTTCTATCGAGAAAGGCGAAGAATCAGTACAGCTGGAATGGGTTTGGAGCAATCCCTAAGGCCTTACAAGATCTTAAAGAAGAAGGCTTGAGGGAGAATTACAGTGCATCTGATGGTAACGATTATGCGAAAGTCTCTGATGATGAAGATGACGATGAAAGATTTTCCAATCCAACTGGAAGCCAGACCTCGACTGCAGCTGTGCCGAAATCATCTTCATCATCGTTAAAAGCTGACAATAGAAGGGAAAAGTCATTGGCGCTGCTGACGCAAAATTTTGTTAAGTTATTTATCTGCAGTCACGTGAATATGATTTCCCTTGATGAAGCTGCTAAGCTTTTATTAGGAGATGGCCACAATTCATCAATAATGAGAAGTAAGAAATCCTTAACTTTGCTATTAATTTTAGAATGTGAACTGGGAAATACCCATACAACGGACACGAGAAAGCCTGCGTTTAGGTGGTTGGGAGTGAGAGGTAAAGTCAAGAATGAGCCTACCGTTCTTCCAGAGTCCAGAAAAAGGGCATTTGGAACTGACGTAACAAATGTCAGTTATAAGAAGACCAAGGCTGAAAGTTCAGCTTATCAGGGTTTAAATCATTGCCTCAACATGCAAAAGCTAGTGCAGTGTGAGAATTCTTCGCAAGAGGATAGCCAGAACAGTCAGGATCAAGAATGTGAACGAACTTCCAAGAGCTATCAATTTGGACCCTTTGCTCCAGTAACAGTAGCTAAGGTTGGTGTCTCAGACAATAACAATACGAAGCGGACTCATGACTGGGAAAGCCTTTCCTCAACATTCCGTCCTCAGTATCACAATCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 2745 42.99 MFQRNINRRVKKTKTKIVFLHLCPPKPSFFLSCRNFTTQSSSALDTATAAAATDIANLVLQSDPKSLRGSLHGLQVQFTPELVDKVLKRLWFHGPKAMQFFKHLEYHPSYAHSSSSFDHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVGAGKPDRAIKVFLSMREHGCRQDLHSFNTILDILCKSKRVEMAYNHLFKVLRGKFKADVVSYNIIANGWCLIKRTPKALEVLKEMVERGLTPTITTYNILLKGYFRAGQIKEAWEFFLQMKEREVEIDVVTYTTMVHGFGVVGEIKRAQKVFDEMVGEGILPSTATYNAMIQVLCKKDSVENAVLLFEEMIKKGCMPNLTTYNVVIRGLCHGGNMDKAMEFMERMKTDGCEPNVQTYNVAIRYFCDAGDIEKGLNVFEKMGHGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMIDRGFLPRKFTVNRVLNGLLLTVPSFDFVVKLVTSEPLPYFLKMSNQILNYTYGSGVFEWFMDGQICGGGGGDGDGDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDGVHSIGLDDAATRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLRENYSASDGNDYAKVSDDEDDDERFSNPTGSQTSTAAVPKSSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAAKLLLGDGHNSSIMRSKKSLTLLLILECELGNTHTTDTRKPAFRWLGVRGKVKNEPTVLPESRKRAFGTDVTNVSYKKTKAESSAYQGLNHCLNMQKLVQCENSSQEDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVSDNNNTKRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 914
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2942389 2955347 + Lsi02G003460.1 Lsi02g00346 655088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00346 914 Gene3D Tetratricopeptide repeat domain 93 207 IPR011990 GO:0005515
Lsi02g00346 914 Gene3D Tetratricopeptide repeat domain 283 370 IPR011990 GO:0005515
Lsi02g00346 914 Gene3D Tetratricopeptide repeat domain 371 480 IPR011990 GO:0005515
Lsi02g00346 914 MobiDBLite consensus disorder prediction 644 690 - -
Lsi02g00346 914 SUPERFAMILY Winged helix DNA-binding domain 559 623 IPR036390 -
Lsi02g00346 914 SMART E2F_TDP_2 692 768 IPR003316 GO:0005667|GO:0006355
Lsi02g00346 914 SMART E2F_TDP_2 560 625 IPR003316 GO:0005667|GO:0006355
Lsi02g00346 914 Pfam PPR repeat family 252 299 IPR002885 -
Lsi02g00346 914 Pfam PPR repeat family 394 439 IPR002885 -
Lsi02g00346 914 Pfam PPR repeat family 322 371 IPR002885 -
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Lsi02g00346 914 Pfam E2F/DP family winged-helix DNA-binding domain 561 625 IPR003316 GO:0005667|GO:0006355
Lsi02g00346 914 Gene3D Tetratricopeptide repeat domain 208 282 IPR011990 GO:0005515
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Lsi02g00346 914 Gene3D - 687 770 IPR036388 -
Lsi02g00346 914 Gene3D - 555 628 IPR036388 -
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
Lsi02g00346 914 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 33 480 - -
Lsi02g00346 914 SUPERFAMILY HCP-like 163 319 - -
Lsi02g00346 914 PANTHER OS02G0679200 PROTEIN 33 480 - -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 256 289 IPR002885 -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 220 253 IPR002885 -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 326 358 IPR002885 -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 361 394 IPR002885 -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 290 323 IPR002885 -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 396 428 IPR002885 -
Lsi02g00346 914 TIGRFAM PPR: pentatricopeptide repeat domain 151 183 IPR002885 -
Lsi02g00346 914 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 322 IPR002885 -
Lsi02g00346 914 MobiDBLite consensus disorder prediction 668 686 - -
Lsi02g00346 914 Pfam PPR repeat 162 180 IPR002885 -
Lsi02g00346 914 Pfam PPR repeat 186 205 IPR002885 -
Lsi02g00346 914 Pfam PPR repeat 220 250 IPR002885 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00346 Lsi06g01514 CCT
Lsi02g00346 Lsi06g01403 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00346 Lsi-Chr2:2942389 Lsi01g01407 Lsi-Chr1:12213629 3.86E-11 dispersed
Lsi10g01142 Lsi-Chr10:15738236 Lsi02g00346 Lsi-Chr2:2942389 6.00E-10 dispersed
Lsi01g02003 Lsi-Chr1:26953422 Lsi02g00346 Lsi-Chr2:2942389 1.58E-18 transposed
Lsi02g02683 Lsi-Chr2:33291377 Lsi02g00346 Lsi-Chr2:2942389 2.91E-24 transposed
Lsi04g00655 Lsi-Chr4:5987831 Lsi02g00346 Lsi-Chr2:2942389 5.49E-14 transposed
Lsi04g01777 Lsi-Chr4:24980393 Lsi02g00346 Lsi-Chr2:2942389 1.06E-13 transposed
Lsi04g01853 Lsi-Chr4:25658944 Lsi02g00346 Lsi-Chr2:2942389 5.70E-10 transposed
Lsi06g01403 Lsi-Chr6:24580561 Lsi02g00346 Lsi-Chr2:2942389 6.40E-29 transposed
Lsi06g01450 Lsi-Chr6:25057733 Lsi02g00346 Lsi-Chr2:2942389 3.01E-08 transposed
Lsi08g00461 Lsi-Chr8:12307911 Lsi02g00346 Lsi-Chr2:2942389 9.97E-67 transposed
Lsi08g00890 Lsi-Chr8:17289554 Lsi02g00346 Lsi-Chr2:2942389 6.79E-18 transposed
Lsi09g00650 Lsi-Chr9:7261246 Lsi02g00346 Lsi-Chr2:2942389 9.38E-25 transposed
Lsi09g00932 Lsi-Chr9:11645555 Lsi02g00346 Lsi-Chr2:2942389 1.82E-29 transposed
Lsi09g01117 Lsi-Chr9:17899413 Lsi02g00346 Lsi-Chr2:2942389 7.60E-50 transposed
Lsi02g00346 Lsi-Chr2:2942389 Lsi06g01514 Lsi-Chr6:25572238 1.85E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24754 PF02319 E2F_TDP 1.40E-20 CL0123 Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00346 - - csv:101218969 858.596