Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00348 ATGGCAACTACAGTCTCGTTCTCTTTGAGGACTTTTATCAAACAGTTTTCGGCTCTTTCGAAGCGAACGGCGTTCGATTTTCCGATCAGAACCAGCTTCAAGCGACTCACCGTCACCTGCAATACTCCGAGATGTCTCCATTTTGAAACCCTAACTTCCCGCCAAAAAGACCAGGTTCATCTTTTCGTCGACGTTCTTCTTCAATGGAACCAGAAAATGAATCTTACGGCTGTTACGGAAGTAAGCGAAGTGATGGAAAGGCACGTCGAGGATTCTCTTGCGATTATACCGCCAATTCGGAACCTGTACTTGTCGCATTGTTCGACTATTCCATGCGATGGCATTAAACTCGTTGATGTTGGAACGGGGGCCGGGCTTCCTGGATTGATCATAGCCATTGCTTGCCCAGAATGGCAAGTAACGTTGATGGAGTCTATGAATAAGCGGTGTCTTTTCTTGGAGCATGCAGTGGGTCATACCGGTTTGACAAATGTTCAAGTTGTGCGAGGAAGAGCAGAGGTACGTGGACACTGCGTTTACGCAATTAAACACACTGGCCTTTCCTCAAGGGTAGAGCTGGCAGCAGTCTCGATTTCATTGTTATATTCACTGTATTTGATATATCCTGATGTAGGGCAGAATTTGGGACATGATCTTTGCTTACGAGAGAAATTTGATGTAGTAGTGGCTAGAGCTGTTGCAGAAATGAGAGTTTTAGCTGAATATTGTCTTCCTATGGTTCGTGTTGGTGGTTTGTTTTTAGCTGCCAAGGGTCATGATCCTCTTGCAGAAGTCACAAATGCAGAAAAGGCAATTGAAATGATGGGTGCCTCCTTACTGCAAATATGCCCTGGTGTGTGTCTTTCTATTGATCTTCCCTGCAATGTCATAATCTCATTGGAATCACATAGTCCATATGGGCAGCGAACTGCCGTTGTTTGTTTAAAAGAACGGCACACTCCGAGGAAGTATCCTCGTGATCCAGGTACACCAGCAAAAGCTCCATTATAG 1011 45.1 MATTVSFSLRTFIKQFSALSKRTAFDFPIRTSFKRLTVTCNTPRCLHFETLTSRQKDQVHLFVDVLLQWNQKMNLTAVTEVSEVMERHVEDSLAIIPPIRNLYLSHCSTIPCDGIKLVDVGTGAGLPGLIIAIACPEWQVTLMESMNKRCLFLEHAVGHTGLTNVQVVRGRAEVRGHCVYAIKHTGLSSRVELAAVSISLLYSLYLIYPDVGQNLGHDLCLREKFDVVVARAVAEMRVLAEYCLPMVRVGGLFLAAKGHDPLAEVTNAEKAIEMMGASLLQICPGVCLSIDLPCNVIISLESHSPYGQRTAVVCLKERHTPRKYPRDPGTPAKAPL 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2972535 2975909 - Lsi02G003480.1 Lsi02g00348 655090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00348 336 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN 4 336 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lsi02g00348 336 Gene3D Vaccinia Virus protein VP39 42 336 IPR029063 -
Lsi02g00348 336 Hamap Ribosomal RNA small subunit methyltransferase G [rsmG]. 48 313 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lsi02g00348 336 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 45 288 IPR029063 -
Lsi02g00348 336 Pfam rRNA small subunit methyltransferase G 56 177 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lsi02g00348 336 Pfam rRNA small subunit methyltransferase G 222 282 IPR003682 GO:0005737|GO:0006364|GO:0008649
Lsi02g00348 336 TIGRFAM rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 61 175 IPR003682 GO:0005737|GO:0006364|GO:0008649
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00348 K03501 gidB, rsmG; 16S rRNA (guanine527-N7)-methyltransferase [EC:2.1.1.170] - csv:101219448 497.664
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g688 . Blo16g00210 . . . Bpe13g00262 Bma06g00198 . Cmo13g00932 . . . . . . Cpe20g00224 . . . . . . . . . . . . . . . . Cone16ag0128 . . Lsi02g00348 Csa01g00822 Chy12g01296 Cme12g01721 . . . . . . . . Sed01g1685 . . Cma13g00906 . Car13g00745 . . . Bhi08g01454 Tan05g2041 Cmetu12g1894 Lac10g0419 Hepe07g2251 . . Cla01g01397 Cam01g1459 Cec01g1498 . Clacu01g1483 Cmu01g1378 Cre01g1293 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010272 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00348 Lsi_Chr02 FPKM 0.0 0.0 1.454526 1.365356 0.749031 1.057084 1.102377 0.0 0.0 0.0