Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00350 ATGAAGAAGACGACCGGAAAGAAGCGGCGTCTTCAAAAACCAGAGCCAGTGGCCGATTCTCACTCCAATGGACCTCGAGCAAAATCAATCAGAACTGTTAATGGCTTCAATTGCTCAACCAGTGAACCGTATCCGGCTCATTCTTCGCCCACTTCGGACGAATGTCTGTCCGTGAGGGACGATTTGTTGAATCTTCATGGCTTCCCTCGAGAGTTTCTTAAGTACCGGAAGGAGCGAGAGAGGCTGAGTGAGTGCTGCTCCATTGTGGACGGCGGCCGCGGTGAGCACCGGGATAATGTGGAATCGGAGCCCGTCGACGAGAAGGAGAGCGTTTTGGATGGATTGGTGAGGACTGTGCTCTCGCAGAACACTACGGAGGCTAATTCCGAGAGGGCTTTTGCTTCTCTCAAGTCTGCTTTTGCTACCTGGGAGGATGTTCTTTCAGCTGAATCCAAATGCATAGAGAATGCCATAAGATGTGGAGGATTAGCACCTACAAAAGCCTCTTGCATAAAAAACATATTGAGTTCTTTGTCAAAGAGAAGAGGCAAACTATGCTTGGAGTATTTGCACGATTTATCCGTCGATGAAATAAAGGCAGAGTTGTCGACTTTCAAAGGAATTGGCCCCAAAACGGTGGCCTGTGTTTTGATGTTCAATCTTCAGAAAGATGATTTTCCAGTAGACACCCATGTTTTTGAGATTGCGAAGTTCTTCGGTTGGGTCCCGGATGACGCAGACAGGAACAAAACATATCTTCATCTTAACCAAAGGATCCCAAATCATCTCAAATTTGATCTCAACTGTCTTCTTTACACTCATGGCAAGGTCTGTTCGAAATGTACGAAGAGAACAGGCGCCCGACAACGAAAGGGATCTGAAGAACAGTATTGTCCCTTGTTCAAGTACTCCAAGAACACTTAA 924 46.65 MKKTTGKKRRLQKPEPVADSHSNGPRAKSIRTVNGFNCSTSEPYPAHSSPTSDECLSVRDDLLNLHGFPREFLKYRKERERLSECCSIVDGGRGEHRDNVESEPVDEKESVLDGLVRTVLSQNTTEANSERAFASLKSAFATWEDVLSAESKCIENAIRCGGLAPTKASCIKNILSSLSKRRGKLCLEYLHDLSVDEIKAELSTFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKFFGWVPDDADRNKTYLHLNQRIPNHLKFDLNCLLYTHGKVCSKCTKRTGARQRKGSEEQYCPLFKYSKNT 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3002352 3004262 + Lsi02G003500.1 Lsi02g00350 655092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00350 307 Gene3D - 100 279 IPR023170 -
Lsi02g00350 307 Gene3D Hypothetical protein; domain 2 106 223 - -
Lsi02g00350 307 SUPERFAMILY DNA-glycosylase 100 284 IPR011257 GO:0003824|GO:0006281
Lsi02g00350 307 MobiDBLite consensus disorder prediction 1 36 - -
Lsi02g00350 307 PANTHER - 8 306 - -
Lsi02g00350 307 CDD ENDO3c 115 275 IPR003265 GO:0006284
Lsi02g00350 307 SMART endo3end 120 277 IPR003265 GO:0006284
Lsi02g00350 307 Pfam HhH-GPD superfamily base excision DNA repair protein 116 259 IPR003265 GO:0006284
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00350 K10773 NTH; endonuclease III [EC:4.2.99.18] - csv:101219928 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00350 Lsi-Chr2:3002352 Lsi10g01192 Lsi-Chr10:16167521 1.04E-14 dispersed
Lsi02g00350 Lsi-Chr2:3002352 Lsi03g01942 Lsi-Chr3:30823233 3.05E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g691 . Blo16g00212 . . . Bpe13g00260 Bma06g00201 . . Cmo18g00115 . . . . . . . . . . . . . . . . . . . . . Cone2ag0882 . . . Lsi02g00350 Csa01g00825 Chy12g01292 Cme12g01718 . . . . . . . . Sed08g2536 . . . Cma18g00147 . Car18g00142 Cpe09g01044 . Bhi08g01456 Tan05g2039 Cmetu12g1964 Lac10g0422 Hepe07g2249 . . Cla01g01395 Cam01g1456 Cec01g1492 . Clacu01g1480 Cmu01g1375 Cre01g1291 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011007 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00350 Lsi_Chr02 FPKM 75.497543 94.949913 73.903061 65.849533 96.638618 108.796944 98.206787 70.059654 70.015289 72.399582