Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00351 ATGGCTTTCCCTTTCCCTTTACTTTTCCTCATTACCATCACCATCTCCTTTTCCCTCCCATTCCCTTCTCTTGTTCATTCCAAACTTACCGTTGGTTATTATCAAAAAACCTGTCCCGATTTCGAGAAGATCATTCGGGAAACTGTCACCAATAAGCAAATCACTAGTCCTGTCACTGCTGCCGGAACCCTTCGCCTCTTCTTCCATGACTGCATGGTCGATGGTTGCGATGCCTCCATCCTCATTTCCTCCAACTCCTTCAATCAAGCCGAGCGTGAGGCCGAAATCAACCACTCCCTCTCTGGTGACGCCTTCGACGTCGTCGTCCATGCCAAGACCAACCTCGAACTTTCCTGCCCTGGCATTGTCTCTTGTTCCGACATCTTGGCACAGGCGACTCGAGATCTAGTGGTGATGGTGGGAGGACCATTCTACAACGTCCGATTGGGAAGAAAAGATGGAGTGTTATCAAAAGTAGAAAACGTGGAAGGAAACCTCCCAAAAGTGGACTTTACAATGGACAAACTCATCGATTTCTTCAACCAAAGAGGCTTCACCACCCAAGAAATGGTTGCTCTATCCGGCGGCCACACCATCGGCTTCTCCCACTGCAAGGAATTCTCCGACCGCCTCTTTAATTTCAGCACCACGTCACCAACCGACCCCGACATTTACCCCAAATTCGCCGAAAAGCTCAAGGCCATGTGTGCCAATCACCTGACCGACACTGCCATGTCAGCTTTCAACGACGTCATGACACCTGGCAAATTTGACAATATGTTCTTCCAAAATCTTCCACGTGGCCTTGGCCTACTGGCCACTGACAACGCCCTCAATAAGGATCCCAGGACCAAGCCGTTTGTCGATCTTTACGCCGTTAATCAAACGGCGTTTTTTAACGACTTTGCTCATGCTATGGAGAAGCTCAGCGTTTACGGCGTTAAGACGGGAAGGAAAGGAGAGGTTCGACGAAGGTGTGACCTCTTTAATTCCATTAAGACATGA 1005 49.05 MAFPFPLLFLITITISFSLPFPSLVHSKLTVGYYQKTCPDFEKIIRETVTNKQITSPVTAAGTLRLFFHDCMVDGCDASILISSNSFNQAEREAEINHSLSGDAFDVVVHAKTNLELSCPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGVLSKVENVEGNLPKVDFTMDKLIDFFNQRGFTTQEMVALSGGHTIGFSHCKEFSDRLFNFSTTSPTDPDIYPKFAEKLKAMCANHLTDTAMSAFNDVMTPGKFDNMFFQNLPRGLGLLATDNALNKDPRTKPFVDLYAVNQTAFFNDFAHAMEKLSVYGVKTGRKGEVRRRCDLFNSIKT 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3006170 3007764 - Lsi02G003510.1 Lsi02g00351 655093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00351 334 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Haem peroxidase superfamily signature 123 140 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 ProSiteProfiles Plant heme peroxidase family profile. 28 330 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 Gene3D - 32 330 - -
Lsi02g00351 334 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Lsi02g00351 334 PANTHER PEROXIDASE 41 8 334 - -
Lsi02g00351 334 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 304 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 141 156 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 122 132 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 103 116 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 PANTHER - 8 334 IPR000823 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 ProSitePatterns Peroxidases active site signature. 60 71 IPR019794 GO:0004601
Lsi02g00351 334 Pfam Peroxidase 47 293 IPR002016 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 Gene3D Peroxidase, domain 2 167 309 - -
Lsi02g00351 334 SUPERFAMILY Heme-dependent peroxidases 29 330 IPR010255 GO:0004601|GO:0006979|GO:0020037
Lsi02g00351 334 CDD secretory_peroxidase 28 329 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00351 Lsi-Chr2:3006170 Lsi03g01427 Lsi-Chr3:25241352 2.10E-141 dispersed
Lsi10g00515 Lsi-Chr10:7360540 Lsi02g00351 Lsi-Chr2:3006170 1.09E-60 dispersed
Lsi01g00911 Lsi-Chr1:7369170 Lsi02g00351 Lsi-Chr2:3006170 3.05E-97 transposed
Lsi04g02192 Lsi-Chr4:28971877 Lsi02g00351 Lsi-Chr2:3006170 1.73E-86 transposed
Lsi02g00351 Lsi-Chr2:3006170 Lsi02g01539 Lsi-Chr2:21230961 2.08E-120 wgd
Lsi02g00351 Lsi-Chr2:3006170 Lsi06g01521 Lsi-Chr6:25632662 5.42E-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00351 K00430 - csv:101220163 603.208