Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00357 ATGTCAAGATTTTCAAATGAAATGAAGCAGAAAGATGGTTATCTGATATACCCATCTCCTCTTTCTCCTTTTGATGGTGGCACTGATCCAAAATCAAATGATTCTACGTCATCATCATCTTCTTCTTCTACTTCTTTCAGCAGTATCAGCCCAATCCTTCTTCTAGTTATAGTAATTCTTGCAGTCATCTTCTTCATCTCTGGTTTACTCCATTTGCTCGTTCGATTTCTGCTAAAAAGATCTTCCCCATCAATCTACCAATCCAATCGATACCCAGAAAGGCCTGGACCTCACACACTCCAAAGACAGCTCCAGCAGCTCTTTCGCCTTCACGATTCAGGCCTCGACCAAGCCTTCATCGACGCTTTGCCAGTGTTCTTGTACAAAGATATCATGGGTTTAAAAGAGCCATTCGATTGCGCCGTTTGTCTCTACGAATTTTCCGACCAGGACAGGCTGAGATTACTCCCCATCTGCAGCCATTCTTTTCATATCAATTGCATAGACACATGGCTACTCTCGAACTCCACATGTCCTCTCTGCCGAGCCACCCTTTTGGGCTCTAGTTTTCCTTCCGAAAACCCTAATCTCAACGAGATTTTAGGGCAAGAAAACAGCTCTCACAGACACCCAGAAAACGCCATTTCTGGAAATCATCAGAAACGAGTAACAACAATGGAGGAATCTGCAGGGGAAATGAGAGTGTTGTCTGTGAGACTCGGGAAGTTCAAGAGAATAAACAGCGAAGAAGAAGATGATGATGAAGAACAAATAGAAGAGAAAGGAGAGAGCAGTAGCCAAAACAACCTAAACGCGAGAAGATGCTACTCAATGGGGACTTACCAATACGTTGTTGGAGAATCAGATTTACAGGTGATGAAAGAGAGATTAAACCCTGAAAATCTTCGAGGAAATGGGGAAATGGAAGGGAAGAAAATCAGTGGGAGAAGTAAAGGGGAAAGTTTCTCGGTGTCGAAGATTTGGCAATGGTCGAAGAAGAGTGGGTTGCCAATTCCGAGCAGCTCGAACAGTCAATGGAAGCCGGAACTTGTCTGA 1056 43.75 MSRFSNEMKQKDGYLIYPSPLSPFDGGTDPKSNDSTSSSSSSSTSFSSISPILLLVIVILAVIFFISGLLHLLVRFLLKRSSPSIYQSNRYPERPGPHTLQRQLQQLFRLHDSGLDQAFIDALPVFLYKDIMGLKEPFDCAVCLYEFSDQDRLRLLPICSHSFHINCIDTWLLSNSTCPLCRATLLGSSFPSENPNLNEILGQENSSHRHPENAISGNHQKRVTTMEESAGEMRVLSVRLGKFKRINSEEEDDDEEQIEEKGESSSQNNLNARRCYSMGTYQYVVGESDLQVMKERLNPENLRGNGEMEGKKISGRSKGESFSVSKIWQWSKKSGLPIPSSSNSQWKPELV 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3051094 3052149 + Lsi02G003570.1 Lsi02g00357 655099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00357 351 Pfam Ring finger domain 139 182 IPR001841 -
Lsi02g00357 351 ProSiteProfiles Zinc finger RING-type profile. 140 182 IPR001841 -
Lsi02g00357 351 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE 1 344 - -
Lsi02g00357 351 SMART ring_2 140 181 IPR001841 -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 247 271 - -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 297 322 - -
Lsi02g00357 351 SUPERFAMILY RING/U-box 119 186 - -
Lsi02g00357 351 CDD RING-H2_PA-TM-RING 139 182 - -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 26 46 - -
Lsi02g00357 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 344 - -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 1 46 - -
Lsi02g00357 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 187 IPR013083 -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 297 316 - -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 202 229 - -
Lsi02g00357 351 MobiDBLite consensus disorder prediction 202 224 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00357 - - - csv:101221418 573.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00357 Lsi-Chr2:3051094 Lsi11g00720 Lsi-Chr11:7802202 6.99E-48 dispersed
Lsi02g00357 Lsi-Chr2:3051094 Lsi02g01549 Lsi-Chr2:21345539 5.45E-114 wgd
Lsi02g00357 Lsi-Chr2:3051094 Lsi04g00529 Lsi-Chr4:4879568 2.89E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone2ag0138 Cone16ag0916 Lsi02g00357 Csa01g00833 Chy12g01285 Cme12g01710 . . . . . . . . Sed08g2492 . . . Cma18g00156 . Car18g00149 Cpe09g01038 . Bhi08g01585 Tan05g2030 Cmetu12g1860 Lac10g0429 Hepe07g2243 . . Cla01g01388 Cam01g1447 Cec01g1483 . Clacu01g1470 Cmu01g1365 Cre01g1282 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013813 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 2 1 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00357 Lsi_Chr02 FPKM 8.378747 9.549259 11.232785 13.334896 41.264187 45.196499 48.494682 12.660807 13.050355 13.409541