Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00365 ATGTACGCGTCGTCCTCCGTTTCGATTGCAGCCCTTCCTTGCCCACGCTTGCTTCAGCCTCCATTGAAGCCCTCCACGTGCTTTCAAACTTCTTTCAACCGCCGTCATCTTATTACCACTCTGCTCTCTGTCTTTACCCCTTCTTTTATCGATTTTACTCTGCCCTGTTCTTCTGATTTGGTTGCTGAAGCTCGTGGTCTGTTTCAAATGCCCCCTGTTCGTCTCGTCAATCGGTACTTTCTGGTGAGGGCAGGGGAGTCTGAATTCGATAGTTTTGGAATAATTAACACAAACCCAGTTGCAAAGACATCTGTTGATAGTGGATTGTCTGAGGAAGGGAAGAAGCAAACTGTTAAAGCAGCTTTTAAATTGAAGGAAATGGGGGCCTGTGAAAATGGTTGCTGGATTTGGCCCTCTATTACACAGAGAGCTTATCAAGCAGCAGAGATTATTGCATCACTTAATGGTGTGAATCGAAGTTATATAGTTCCTGAATACAGTTTTCTTGATGCCCGTGGGCTTGGAGCTTATGAAGGCAAGAGATTGGATTCTGTGTCAGAAGTATGGTTTCTTTCAATCTTTTATACCATCTCCTCAATTATTAAACCTCCTCCAATAGACGATGGCACCCCAAACGAGAGCGTATCTGATGTCTTCGTTCGTGTAACACAACTGATGTCGATTCTCGAAACCCAATACTCTGGTGATACTATCATTATTATCTCACCAGATTCTGATAATTTGACAGTTCTACAAGCTGGTTTAATTGGCCTCGACTTGCGAAGGCACCATGATCTTTCCTTTGCTCCTGGGGAGAATAATTGTGACCATCAATTGGAGAAGGTACAATACTTGTACGTATCCTTTGCACATATGGATTGTGGTATGTGTCCAAGCTTTAAAGAAGTGATACAAGTCTTAAGATATATTTATGATTGCTTGCTTCTGATGGCTAATGTGGCTATGTATATCACTTTCTTCATCCAGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTAGATTTTGGATGGCAGCAGCGATATGCTCGGTTTTGTGGAAGAGTTGTGGTTCTTTCTATCCTCTCTCTATTGCTCTACCCCTTTCTATGTGCATGGACTGTAATTGGCACCCTGTGGTTTAGAGATGCTAAAGACTGTTTGCCTGAAGAAGGACAGAAATGGGGTTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTCCTTTGCATTGCCTGCATGTCAGTTGGAAAGTGGTTAGCGCGTAGACAAGCGCACTTGTTCCGTGCCCAACAAGGCATACCAGTATCAGAATATGGGGTACTGGTTGATATGATTAGAGTTCCTGATTGGGCATATGAAGCTGCAGGACTGGAAACACGAGGCATTGGCCAAGATGCTACTGGGTACCATCCCGGGCTGTTCTTAACCTCGGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAGGAACTTCCAAAGTTCAGGCTGAAGGCTGTCCCAACTGATTGCAGTGAATGCCCTATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGTGGTATGCCATGTGCTCACAATTTCCACGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTTAAATGTCCTCGATGCCGCTCATCCGTGTTCCCAAATCTCGACCTCAGCGCTCTTTCTAACCTGCATTCAGACACAGAACAAACATCTGACAATGCTTTTGTAACAACCCAACCGTCAAGTCTATCGAGATCAACTCCAACCCGTGCAGCTCATCGCGAAAACACAGCAGACCTCTATACTGACACTGCCTTAGAAGCTGTGGAGAATGGAAACTCACCCCTGCCATCTGCTTCTCCACCTTGA 1905 45.04 MYASSSVSIAALPCPRLLQPPLKPSTCFQTSFNRRHLITTLLSVFTPSFIDFTLPCSSDLVAEARGLFQMPPVRLVNRYFLVRAGESEFDSFGIINTNPVAKTSVDSGLSEEGKKQTVKAAFKLKEMGACENGCWIWPSITQRAYQAAEIIASLNGVNRSYIVPEYSFLDARGLGAYEGKRLDSVSEVWFLSIFYTISSIIKPPPIDDGTPNESVSDVFVRVTQLMSILETQYSGDTIIIISPDSDNLTVLQAGLIGLDLRRHHDLSFAPGENNCDHQLEKVQYLYVSFAHMDCGMCPSFKEVIQVLRYIYDCLLLMANVAMYITFFIQVDYTSVFAFRLLLFIDNALSAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLFRAQQGIPVSEYGVLVDMIRVPDWAYEAAGLETRGIGQDATGYHPGLFLTSAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSVFPNLDLSALSNLHSDTEQTSDNAFVTTQPSSLSRSTPTRAAHRENTADLYTDTALEAVENGNSPLPSASPP 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3123066 3131555 + Lsi02G003650.1 Lsi02g00365 655107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00365 634 Gene3D - 75 289 IPR029033 -
Lsi02g00365 634 SUPERFAMILY RING/U-box 501 568 - -
Lsi02g00365 634 MobiDBLite consensus disorder prediction 581 613 - -
Lsi02g00365 634 Pfam Histidine phosphatase superfamily (branch 1) 80 268 IPR013078 -
Lsi02g00365 634 SMART ring_2 519 559 IPR001841 -
Lsi02g00365 634 MobiDBLite consensus disorder prediction 581 605 - -
Lsi02g00365 634 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 321 602 - -
Lsi02g00365 634 CDD RING-H2_RNF111_like 518 562 - -
Lsi02g00365 634 Pfam Ring finger domain 518 560 IPR001841 -
Lsi02g00365 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 488 565 IPR013083 -
Lsi02g00365 634 SUPERFAMILY Phosphoglycerate mutase-like 70 271 IPR029033 -
Lsi02g00365 634 ProSiteProfiles Zinc finger RING-type profile. 519 560 IPR001841 -
Lsi02g00365 634 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 321 602 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00365 Lsi-Chr2:3123066 Lsi07g01038 Lsi-Chr7:15743058 1.48E-13 dispersed
Lsi08g00504 Lsi-Chr8:12960070 Lsi02g00365 Lsi-Chr2:3123066 5.82E-09 transposed
Lsi02g00365 Lsi-Chr2:3123066 Lsi06g01547 Lsi-Chr6:25828898 9.07E-114 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00365 K16284 - csv:101222360 596.66