Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00366 ATGAGGAATTTAAACTGGTTTAAGCCAATTTCGATTAATGGGAAGCCTGGGAGGAGGCTTTCACTTGGAGAGTACCAGCGGGCTGTGTCGTGGTCTAAGTATTTGGTGTCTTCAGGAGCAGAGATAAAAGGAGAGGGAGAAGAGGAATGGAGTGCGGACATGTCCCAGTTGTTCATTGGCTTCAAATTTGCTACTGGAAGGCACAGTAGGATTTACAGAGGTGTGTATAAGCAGAGGGATGTTGCAATTAAGCTGATAAGCCAGCCTGAGGAAGATGAAAATTTGGCTAACTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGACTGAGACATCCCAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTTTTTTGTATTATCACGGAGTATATGACAGGGGGTTCGTTAAGAAAATATCTCCATCAACAGGAGCCACATTCCGTTCCGCTGAACTTGGTTCTGAAACTAGCCCTCGAAATCTCACGTGGGATGCAGTACCTTCATTCTCAGGGAATACTTCACAGAGATCTCAAATCAGAAAATCTTTTACTTGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGAATCTCGTGCTTAGAATCTCAATGCGGAAGTGCAAAGGGATTCACCGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACACCACACCAAAAAGGTTGATGTTTATAGCTTTGGCATTGTCTTATGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAGGCAGCATTTGCAGTCTGCCAGAAGAATGCAAGACCACCTCTGCCTTCTGCGTGCCCGCAGGCATTTCGTTATCTGATCAAGAGATGCTGGTCGAAAAATCCCGACAAGCGACCGCATTTTGACGAGATTGTTTCAGTTTTGGAAACTTATGTGGAGTCTTACAATGAAGATCCAGAATTTTTTTGTCATTACAAGGTTATTGTTATGGCGTCTCGATCAGGAACTCTTCCAATGGCGGCCGAGAATGTGCAGAATTTAGGGGTTGACCAACAAGAAAAAGAGGTTCAGCAAGATGGGAAAGCTGAAGTTGATCAACTAAGTTCTACAACCCCCTTGGTTGTCAACCTTGAATCCGTTCGAGAGGAAAAAGTAAAAAATGCTGTGAAGTTCCTTTCATATCCCAAAGTTAGGGGGTCTCCTGTCATCTATAGAAGATTTTTTCTTCAGAAGAATGGCCTTACAAAGGAGGAGATAGATGAAGCATTTAGGCGTGTGCCTGACCCATCTCCAATAGCAGTTGCATCTAATGGGAGTCAAGATGGACGGGTGAAATCACCTTCAAACAATCAGCTACAAGCTTCAACCCAAGCTTTACAGCCTTCAGCTTCTGCACCCACTGCGCCCACCACGATTGTTTCATCTACGGGTACAATGAAGGGGTCTGAATTTCATTGGCCTGACGTACTTATAGCTGCACGACTGCTGTCAATTTCAGGTGCTGGATTAGCTTTCATAATAATTAAGAACAAAATGATTCCAAAATTGAAATCCTGGATACGCATTGTAAACAATGGACGTAAAGAGATTGTAAAAGGAGAGAGTTCCGCAGCTGCTGCTGTGAAAGCAGCTTCAGAAGCGACAATTGATCTAGCAAGAGCATGCCAGGATTTGTTGAACTCAACATATCAAGTTAAGACATGGATTAGCCAGGATTTGTTGAACTCAAAATATCAAGGTGATTCAGGACGAACAAATTATTCTGGCAAAAGAGCGTCCGGTAACTTCAATCCTTTACACGAAGTGCAGAGCCAGGGGGAGGGTTTTTCTTCCACGATGCAGAATTGTGGGATGAACTATCAGCGGAATGATGACGATTCAGCATCTTGGGGGCAGCAACATAATGTCGAAAAACATGAGCAGCCAATTAGGCAGCCGGGGATTCCTCCTTCCCTACCACTGATCTCAATACCAGAAGCAGCAGATTCTATTCAAGCCTCTAAATCAACTGTTCAGACTGAAACATTAGCCAACAATCAGTTCGTCACACCTCCAGATATGGCTTCTGAGTGA 2082 43.66 MRNLNWFKPISINGKPGRRLSLGEYQRAVSWSKYLVSSGAEIKGEGEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQRDVAIKLISQPEEDENLANFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMTGGSLRKYLHQQEPHSVPLNLVLKLALEISRGMQYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRYLIKRCWSKNPDKRPHFDEIVSVLETYVESYNEDPEFFCHYKVIVMASRSGTLPMAAENVQNLGVDQQEKEVQQDGKAEVDQLSSTTPLVVNLESVREEKVKNAVKFLSYPKVRGSPVIYRRFFLQKNGLTKEEIDEAFRRVPDPSPIAVASNGSQDGRVKSPSNNQLQASTQALQPSASAPTAPTTIVSSTGTMKGSEFHWPDVLIAARLLSISGAGLAFIIIKNKMIPKLKSWIRIVNNGRKEIVKGESSAAAAVKAASEATIDLARACQDLLNSTYQVKTWISQDLLNSKYQGDSGRTNYSGKRASGNFNPLHEVQSQGEGFSSTMQNCGMNYQRNDDDSASWGQQHNVEKHEQPIRQPGIPPSLPLISIPEAADSIQASKSTVQTETLANNQFVTPPDMASE 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3140797 3148528 + Lsi02G003660.1 Lsi02g00366 655108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00366 693 Gene3D Transferase(Phosphotransferase) domain 1 140 377 - -
Lsi02g00366 693 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Lsi02g00366 693 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Lsi02g00366 693 Pfam Pex14 N-terminal domain 384 428 IPR006785 -
Lsi02g00366 693 MobiDBLite consensus disorder prediction 436 477 - -
Lsi02g00366 693 MobiDBLite consensus disorder prediction 669 693 - -
Lsi02g00366 693 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Lsi02g00366 693 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Lsi02g00366 693 MobiDBLite consensus disorder prediction 622 653 - -
Lsi02g00366 693 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00366 693 MobiDBLite consensus disorder prediction 433 477 - -
Lsi02g00366 693 SUPERFAMILY Protein kinase-like (PK-like) 47 311 IPR011009 -
Lsi02g00366 693 CDD STKc_MAP3K-like 66 311 - -
Lsi02g00366 693 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00366 693 Gene3D - 378 437 IPR036388 -
Lsi02g00366 693 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Lsi02g00366 693 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Lsi02g00366 693 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Lsi02g00366 693 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Lsi02g00366 693 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Lsi02g00366 693 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00311 Lsi-Chr1:2761648 Lsi02g00366 Lsi-Chr2:3140797 1.19E-114 dispersed
Lsi01g00468 Lsi-Chr1:3908545 Lsi02g00366 Lsi-Chr2:3140797 2.18E-137 dispersed
Lsi02g00366 Lsi-Chr2:3140797 Lsi02g00759 Lsi-Chr2:6999270 1.02E-105 dispersed
Lsi05g02087 Lsi-Chr5:27721179 Lsi02g00366 Lsi-Chr2:3140797 2.03E-25 dispersed
Lsi09g00188 Lsi-Chr9:1957590 Lsi02g00366 Lsi-Chr2:3140797 6.09E-25 dispersed
Lsi03g01625 Lsi-Chr3:27358811 Lsi02g00366 Lsi-Chr2:3140797 3.03E-37 transposed
Lsi06g01550 Lsi-Chr6:25857697 Lsi02g00366 Lsi-Chr2:3140797 1.19E-08 transposed
Lsi02g00366 Lsi-Chr2:3140797 Lsi03g01392 Lsi-Chr3:24889505 3.07E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83348 PF07714 PK_Tyr_Ser-Thr 8.50E-65 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00366 - - csv:101222762 672.544