Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00370 ATGGGTCTTACTTCTCTCCAAGTCTGCATGGACTCTTCTGATTGGCTACAGGGTACTATAAACGAGGAGTCTGGGATGGATTCATCTTCATTATCAGGAGATATGCTTTCATGTTCAAGGCCATTAACAGAGAGGAGATTAAGGCCACAACATGATCAAGCACTGAAATGTCCAAGATGTGATTCAACTCACACCAAATTTTGCTATTACAACAATTATAGTCTTTCTCAGCCTCGTTACTTCTGCAAAACTTGTCGTAGGTATTGGACTAAAGGAGGAACTCTAAGAAACATTCCTGTTGGTGGTGGCTGTAGAAAGAACAAAAAAGTTTCCACTACTAAGAAATCCAATGATCCACAGCAACAACAACAACAACAGCCACAAATTCAACAACCCATTTCTCAAAATCATCATCTTCTTCATAATCATCATCATCATCATGGCCCTTCTTCTTCTTCTTCTTCTTCTCTTCACATTCATAATCCTACTGATCTTCATCTCTCATTTCCAGACCAAGTTCAATTCCCACATTTCAATCCTCTCATTGGAAGTGGAACCACTCCAAATTTCACCATTGGAATGCTTGAAACTCATCATCATCATCATCATCAAACTAGACCCATTGATTTCATGGACACTAAAATGGAAGGCATTGTTGGGAATAATGGTCATTACTCAACAAACACTGATCATTTAGCTATGGTTGGAGGGTTAAATGGAGATCATCATATCACAGCTGCTGCAACAAATTTCCATGGCCTTTGTTCTCCTTATGGACTGTCACTTGATGGGAATATTAACCAAATGATGATTCCTTATGATCAACATCAAACAAATGAAGATCCAAATGGAATGGATGTGAAACCAAATACAAAGCTTTTGGCTTTGGAATGGCAAGATCAAGGATGTTCAGAGAAAGTTGAATCTTATGGATATATGAATGGAATTGGGTCTTCTTGGAATGGGATGATGAATGGATATGGACCATCAACAACCAACCCATTGGTGTAA 1011 38.58 MGLTSLQVCMDSSDWLQGTINEESGMDSSSLSGDMLSCSRPLTERRLRPQHDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVSTTKKSNDPQQQQQQQPQIQQPISQNHHLLHNHHHHHGPSSSSSSSLHIHNPTDLHLSFPDQVQFPHFNPLIGSGTTPNFTIGMLETHHHHHHQTRPIDFMDTKMEGIVGNNGHYSTNTDHLAMVGGLNGDHHITAAATNFHGLCSPYGLSLDGNINQMMIPYDQHQTNEDPNGMDVKPNTKLLALEWQDQGCSEKVESYGYMNGIGSSWNGMMNGYGPSTTNPLV 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3192804 3194826 + Lsi02G003700.1 Lsi02g00370 655112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00370 336 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 328 IPR045174 GO:0003700|GO:0006355
Lsi02g00370 336 PANTHER DOF ZINC FINGER PROTEIN DOF5.6-LIKE 15 328 - -
Lsi02g00370 336 ProSiteProfiles Zinc finger Dof-type profile. 55 109 IPR003851 GO:0003677|GO:0006355
Lsi02g00370 336 MobiDBLite consensus disorder prediction 100 163 - -
Lsi02g00370 336 Pfam Dof domain, zinc finger 52 109 IPR003851 GO:0003677|GO:0006355
Lsi02g00370 336 ProSitePatterns Zinc finger Dof-type signature. 57 93 IPR003851 GO:0003677|GO:0006355
Lsi02g00370 336 MobiDBLite consensus disorder prediction 114 137 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00370 Lsi06g01388 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00822 Lsi-Chr1:6510798 Lsi02g00370 Lsi-Chr2:3192804 1.66E-33 dispersed
Lsi02g00143 Lsi-Chr2:1170925 Lsi02g00370 Lsi-Chr2:3192804 5.13E-29 dispersed
Lsi02g00370 Lsi-Chr2:3192804 Lsi02g01450 Lsi-Chr2:20161972 5.27E-37 dispersed
Lsi02g00765 Lsi-Chr2:7051145 Lsi02g00370 Lsi-Chr2:3192804 2.00E-32 dispersed
Lsi06g01388 Lsi-Chr6:24484328 Lsi02g00370 Lsi-Chr2:3192804 1.24E-35 dispersed
Lsi02g00370 Lsi-Chr2:3192804 Lsi10g01305 Lsi-Chr10:17237805 3.54E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24755 PF02701 zf-Dof 1.80E-33 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00370 - - csv:101223232 561.607