Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00371 ATGGCTGGTCCTGGGGAAAACCTACATCCTGAAATTCGTGGTTTAAAGGGATTGAATCAGCAAGCTGAGGATAAAAACCAGCATGTTGAGAAAGAGGGTGGCCTGAGTGGTGGTGAAAAAGACATGGCTCCGGTTACCGGCAATTCCATTCACAGGTCAGGTTCTCGTCCCCAGCTAGACCTCAGCAAAGCAGAAATTCAAGGAAATTTTGAAGAGAGAGATCCCACAATTCTGTTGCCTAACCAATCTGATGATATATCTCACCTGGCTCTCGACATCGGCGGATCTCTCATCAAATTGGTGTACTTTTCAAGACATGAAGATCAATCGGTTGATGATAAGAGAAAGAGAAGCATGAAGCAGAGGCTGGGGTTATCAAATGGTAATAGAAGAAGTTATCCAGTTCTTGGTGGGAGGCTTCATTTTGTGAAGTTTGAGACAAGCAAGATTAACGAGTGTTTAGACTTCATCCATTCCAAGCAGCTACATCGTGGTGCTTGCAAAGGTTTACCTCATTGGCATTCAGATGGCTCAGATGGCTCAGCAAATGAAAATGCCATCATTAAGGCAATACGTCATGAAGCTTTCACTCATATGGAGGGTAAAAAAGAGTTTGTGCAACTTGACCATAACGAATTGTTTCCTTATCTGCTTGTTAACATTGGATCTGGTGTCAGCATGATCAAGGTTGATGGTGATGGGAAATTTCAGAGAGTTAGTGGGACAAATGTTGGAGGGGGCACTTACTGGGGCTTAGGAAGACTGTTAACAAAATGTAATAGTTTTGATGAGTTGTTAGAGCTTAGTCAAAAGGGAGATAATAGCACAATTGACATGCTTGTTGGGGACATATATGGTGGCATGGATTACTCTAAGATTGGTCTCTCTGCGTCGACAATTGCATCTAGTTTTGGCAAGACCATCTCAGTGAACAAGGAGCTTGAAGACTACAGACCAGAAGATATCTCATTGTCTCTCTTGCGAATGATCTCGTATAACATTGGACAGATTTCGTACTTGAATGCTCTACGGTTTGGACTTAAGAGAATATTTTTTGGAGGATTCTTTATCAGGGGACATGCATATACCATGGATACAATTTCCTTCGCAGTTCACTTCTGGTCGAAAGGAGAAGCACAGGCAATGTTCTTGCGTCATGAGGGGTTCTTAGGAGCCTTAGGTGCATTCATGAGCTATGAAAAGCATGGTCTTGATGATCTATTGGCCCATCAGTTAGTCGAAAGGTTTCCTATGGGTGCACCATACACGGGAGGGAAAGTTCATGGGCCTCCACTTGGTGATTTGAATGAGAAGATTTCTTGGATGGAGAAATTTTTGCAGAAGAGAACAGAAATTACTGCACCTGTTCCTATGGCTCCCCCTGGAACAACTGGACTTGGAGGCTTTGAAGTCCCTTTATCCAAAGGAGAAACCCTGCGATCTGATGCAAGTGCCCTAAATGTTGGTGTACTCCATCTGGTACCTACTTTGGAGGTGTTTCCACTGTTAGCTGATCCAAAGACATATGAGCCTAATACAATTGATCTCTCTGATCACAGTGAGTTGGAGTACTGGTTCACCGTGCTTTCAGAGCATCTAGCAGACCTTGTTGATAAGGCTGTTGCAAGTGAAGGTGGGACTGATGATGCCAAGAGAAGGGGTGATGCATTTGCTCGGGCATTTTCTGCCCACTTGAGGAGGTTGATGGAGGAACCGACGGCATATGGAAAGTTGGGTTTGGCTAATCTTCTGGAACTGAGGGAAGAGTGCTTGAGGGAGTTCCAATTTTTTGATGCCTATAGAAGCATAAAGCAGAGGGAGAATGAGGCATCACTTGCTGTATTGCCTGATCTCTTGTTGGAACTTGATAGTATGAATGAGGAAGCAAGACTGCTTACGCTAATTGAAGGTGTTCTTGCTGCAAACATTTTTGATTGGGGCTCTCGTGCTTGTGTTGATCTCTATCACAAGGGGACAATAATTGAGATTTACAGAATGAGTCGCAATAAGATGCAGAGGCCATGGCGGGTCGATGATTTTGATGTCTTCAGAGAGAGAATGTTAGGATCTGGGGATGAGAGGCCCCTTCCACATAAAAGAGCTCTTCTCTTTGTGGACAACTCAGGTGCTGATGTTGTTCTAGGGATGCTTCCCCTGGCAAGGGAACTCCTCCGACGTGGAACAGAAGTTGTTTTAGTTGCAAACTCTCTTCCTGCCCTAAATGATGTTACCGCAATGGAGCTTCCTGATATTGTAGCAGAGGCTGCCAAGCACTGTGACATACTACGTAGAGCTGCCGAAGCAGGGGGACTGATTGTGGATGCCATGATTGACTCTGCAGACGGTTCTAAAGAGAGATCATCTTTTGTTCCCTTGATGGTCGTTGAAAATGGGTGTGGTAGTCCATGTATAGATCTAAGGCAAGTCAGCTCTGAGTTGGCTGCTGCTGCTAAAGATGCTGATTTGGTTATCTTGGAAGGGATGGGGAGAGCCCTTCACACAAACTTCAATGCTCAGTTTAAATGTGATGCTTTGAAGGAAGAGGCGATCAATCCATTAACAGATGAAATTAAGGATTCCGATGTAGAAAACCTCAATGATGGGAGCAAAGAGATGTCTGAAAAGAGGTCTGAGACACGAGAGCGGAAGAAGAGCAAGTATTTGTCTTTTCCGTATATAAACTGGGGGCAGAAAGTTATGCCAGCTGAAACAGAAGATATTAAGGTTCTTAAAATTTCTGGTGAAGGCGAGGATGAAAGTGCAGTTGAGGGACAGAATGAAACCCCATTGCTAGCTAAGTGCAGTGGCAAGTTCTGGAAGAAATGGTACAGGAATATCACCAGTGGGAGTGATGTCGCTGATAATCAAGACTTGACGAGTGCATCACCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAAATTGTCTTTATCCAAACGATAACAACAACTTTGATGCAGTTGCTCAGTTCTTCTCCAGATTTAGGATTTTGATGTTTCATAATGAATCTATTAATGGTGGTCAAAATGAGGCAATGGCTGCGGATTTATTTCTTCTTGGGGGAAAGGTGTCAGAGGTTAAGCATCCTTCTTCTTCTGCTAAATCTGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATTACGAAAATGGAAGGGATGAAATCCAAACCAGTCTCTGGTGATGTGGATTTGACTGGAAAAGTTGAAATAAGTCCTGCAGGAGATGGACAGAAAAAAAGCTCTCTGACTTCCAATGCTAAATCAAAAAAAGATATAGAAAGCTTGGGGAGAGATTTTGCCGACAATCAAGACTTGATGAGTGCATCGCCAGCTGAGTTTCTCTCTGAGCTTCATTTTACTGCTGTAAATTGTCTTTATCCGAATGAAAATAACAACTTTGATACAGTTTCCCAGTTCTTCTCCATATTTAGAATTTTAATGTTTATTGGGGAAAATGTGACAGAGGTTAAGCAGCACCCTTCTTCAGCTGCTAAATCTGGGATCAAGAAAAGAAAAAGTCAGGCAAGTTCTATTAAGAAAATGGAAGAGATGAAATCCAAACCAGTCTCTGGTGATGTGGATTTGACTGGAAAAGCTAAAATAAGTCCTGCAGGAGATGCACAGAAAAAAAGCCCTCTGACTTCCAATGTTAAATCAAAAAAAGATAGAGAAAGCTTGGGGAAATTGAAGACTAAATCCCTTTCTGCCTTGTCAGATGTGAACATAAACCTTTCGTCCTGTAGCTTACTCACAAAAGATTCCCCAGAGGTTGGGGTCTCACCCAATGGTTTACCAAAGCGAAGGAAGAGAAAGAACGACGGATCACATCCCCAGAGTAAACCAACAACGGAAATACCAGATTTAAATGGAAGCGGTACCGTAGCTGGCTTGTTGGTGGAGGATCAGCAGGCTGTGAGCCAAGTTGCTTCCCAACAGAAGTCTGAGCCAAAGAAGAGAAGGAAACTTGGAGCTGCTAAGGAACATTCAAAGGCGTCTACTGAATTCATAAATGTAAATGTGAATGACAGCAATAAACCTGGTTCGTTTTTCATTGACCTACAGGTCACAGCTCCGCAACCACTTGGTGTAATTCCAGAGCAAAATAAAGTGGATTTTGCAGGTGCACCCAACCAGTCAGTGAAAGACCAGACAATTGGCCAGGATCAGAGCAAATCTGGGGGCAAAAAGCGAAAGAGGAAGGAGAAACCACCCTCGACGGATCCAAAGGCTATCTTATCTTGTTTCAATGGAACGGGTACTGACTCTAGTCAAGGGAAAGATTCCCGGGGGACTAACAACCTTCCGCATCAGCAGACTAAACCTAAAAGGAGGAGGAGGAGAAAAGGTGAAGCTAGTCTGAACCATCCAAATCCTTCCGACAGCAGATCATATATTTATAATAGAGTTGAAACTGATGGTGAAGGTTTAGGATCTCTTCTTCTCTTGACTTTCTCTTCAGAAGCTCCCTTGCCTCCGCGGGAGCAAGTTATTACTACGTTTAGCCAGTTTGGATCATTGAAGGAATCAGAGATACAGTTGAAAGATTCCACTGTTGAGATAGTTTTCCTCCGAAGCGCTGACGCTATGGAAGCAGTTCGGAGTTTAAAGAAAAACAACATTTTTGGTCCAACTCTTTTAAAATATCAGCTCTATCATCTCTCAGCTCCCCCCAGGACGTCAGATTCGGACCGGGCTTGCACAGCACTGGCCTATCCAGCTTCTGAGGGCACTCTGAACCCATCAAAGTCTGCTGAATCAGGAAATCAAGCAGGCGAGGCACCACCTATAGAGTTTATAAGGAAAAATCTTCAGATGATGACATCAATGCTGGAGAAGTCAGGAGACAATCTCTCCCCAGACATGAGAGCCAAATTGGAGAGCGATATTGAAGGCCTCCTCAAGAAGGTGAGTTCCATGGCAGGGCCTTCTTCAACATTCATAGAAGTTATCATGTACGAGCCACACACAGGGAAACTTGCACGTATGCTATCAGTCAAGCATTCTCGAGAACTGAGGCTGACAAACGAACGCAAAGAGAAGGAATCCACAAACCAAAGCTTGATACCTGTACACTTTACCGAGTCCCAAAGGTTTCAGATCGAACGTCACCGCAAGACGAGTAATATGTACTATTTATCCGACATGTCGGACTGCACGAATATGAACAGTGAATTACACGCATTGCTCTGTTGTGTCGCCACCTGCCATTGCCATTCTTCAACCTCGACGCCTCCAATCCAAAAATGCCTTCTCTCTCCATTGTTGACTGGGTAA 5280 43.75 MAGPGENLHPEIRGLKGLNQQAEDKNQHVEKEGGLSGGEKDMAPVTGNSIHRSGSRPQLDLSKAEIQGNFEERDPTILLPNQSDDISHLALDIGGSLIKLVYFSRHEDQSVDDKRKRSMKQRLGLSNGNRRSYPVLGGRLHFVKFETSKINECLDFIHSKQLHRGACKGLPHWHSDGSDGSANENAIIKAIRHEAFTHMEGKKEFVQLDHNELFPYLLVNIGSGVSMIKVDGDGKFQRVSGTNVGGGTYWGLGRLLTKCNSFDELLELSQKGDNSTIDMLVGDIYGGMDYSKIGLSASTIASSFGKTISVNKELEDYRPEDISLSLLRMISYNIGQISYLNALRFGLKRIFFGGFFIRGHAYTMDTISFAVHFWSKGEAQAMFLRHEGFLGALGAFMSYEKHGLDDLLAHQLVERFPMGAPYTGGKVHGPPLGDLNEKISWMEKFLQKRTEITAPVPMAPPGTTGLGGFEVPLSKGETLRSDASALNVGVLHLVPTLEVFPLLADPKTYEPNTIDLSDHSELEYWFTVLSEHLADLVDKAVASEGGTDDAKRRGDAFARAFSAHLRRLMEEPTAYGKLGLANLLELREECLREFQFFDAYRSIKQRENEASLAVLPDLLLELDSMNEEARLLTLIEGVLAANIFDWGSRACVDLYHKGTIIEIYRMSRNKMQRPWRVDDFDVFRERMLGSGDERPLPHKRALLFVDNSGADVVLGMLPLARELLRRGTEVVLVANSLPALNDVTAMELPDIVAEAAKHCDILRRAAEAGGLIVDAMIDSADGSKERSSFVPLMVVENGCGSPCIDLRQVSSELAAAAKDADLVILEGMGRALHTNFNAQFKCDALKEEAINPLTDEIKDSDVENLNDGSKEMSEKRSETRERKKSKYLSFPYINWGQKVMPAETEDIKVLKISGEGEDESAVEGQNETPLLAKCSGKFWKKWYRNITSGSDVADNQDLTSASPAEFLSELHFTAVNCLYPNDNNNFDAVAQFFSRFRILMFHNESINGGQNEAMAADLFLLGGKVSEVKHPSSSAKSGIKKRKSQASSITKMEGMKSKPVSGDVDLTGKVEISPAGDGQKKSSLTSNAKSKKDIESLGRDFADNQDLMSASPAEFLSELHFTAVNCLYPNENNNFDTVSQFFSIFRILMFIGENVTEVKQHPSSAAKSGIKKRKSQASSIKKMEEMKSKPVSGDVDLTGKAKISPAGDAQKKSPLTSNVKSKKDRESLGKLKTKSLSALSDVNINLSSCSLLTKDSPEVGVSPNGLPKRRKRKNDGSHPQSKPTTEIPDLNGSGTVAGLLVEDQQAVSQVASQQKSEPKKRRKLGAAKEHSKASTEFINVNVNDSNKPGSFFIDLQVTAPQPLGVIPEQNKVDFAGAPNQSVKDQTIGQDQSKSGGKKRKRKEKPPSTDPKAILSCFNGTGTDSSQGKDSRGTNNLPHQQTKPKRRRRRKGEASLNHPNPSDSRSYIYNRVETDGEGLGSLLLLTFSSEAPLPPREQVITTFSQFGSLKESEIQLKDSTVEIVFLRSADAMEAVRSLKKNNIFGPTLLKYQLYHLSAPPRTSDSDRACTALAYPASEGTLNPSKSAESGNQAGEAPPIEFIRKNLQMMTSMLEKSGDNLSPDMRAKLESDIEGLLKKVSSMAGPSSTFIEVIMYEPHTGKLARMLSVKHSRELRLTNERKEKESTNQSLIPVHFTESQRFQIERHRKTSNMYYLSDMSDCTNMNSELHALLCCVATCHCHSSTSTPPIQKCLLSPLLTG 1759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3196590 3217853 - Lsi02G003710.1 Lsi02g00371 655113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00371 1759 SUPERFAMILY Actin-like ATPase domain 86 164 IPR043129 -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1030 1054 - -
Lsi02g00371 1759 Pfam Damage-control phosphatase ARMT1-like domain 582 844 IPR002791 -
Lsi02g00371 1759 PANTHER PANTOTHENATE KINASE 185 796 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi02g00371 1759 TIGRFAM panK_eukar: pantothenate kinase 187 398 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi02g00371 1759 Gene3D - 80 173 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1253 1294 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 23 37 - -
Lsi02g00371 1759 Gene3D Uncharacterised protein PF01937, DUF89, domain 3 676 857 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1161 1229 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1177 1191 - -
Lsi02g00371 1759 Gene3D - 194 388 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1307 1333 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1029 1091 - -
Lsi02g00371 1759 Coils Coil 12 32 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1 60 - -
Lsi02g00371 1759 PANTHER PANTOTHENATE KINASE 2 36 165 - -
Lsi02g00371 1759 PANTHER PANTOTHENATE KINASE 2 185 796 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1376 1466 - -
Lsi02g00371 1759 Gene3D - 273 313 - -
Lsi02g00371 1759 Pfam Fumble 186 397 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi02g00371 1759 Pfam Fumble 88 164 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1376 1392 - -
Lsi02g00371 1759 PANTHER PANTOTHENATE KINASE 36 165 IPR004567 GO:0004594|GO:0005524|GO:0015937
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1315 1330 - -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 1413 1439 - -
Lsi02g00371 1759 Gene3D - 512 596 IPR035073 -
Lsi02g00371 1759 SUPERFAMILY AF1104-like 490 845 IPR036075 -
Lsi02g00371 1759 SUPERFAMILY Actin-like ATPase domain 195 399 IPR043129 -
Lsi02g00371 1759 MobiDBLite consensus disorder prediction 860 880 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00371 K24265 PANK4; bifunctional damage-control phosphatase, subfamily II, fusion protein - csv:101203117 1574.3
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi11g01303 Lsi-Chr11:21648881 Lsi02g00371 Lsi-Chr2:3196590 6.82E-44 transposed
Lsi02g00371 Lsi-Chr2:3196590 Lsi04g00554 Lsi-Chr4:5060153 8.79E-128 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g373 . . Bda06g00495 . . . . Bma12g00944 Cmo13g01084 . . . . . . Cpe20g00105 . . . . . . . . . . . . . . . . . . . Lsi02g00371 Csa01g00850 Chy12g01456 Cme12g01896 . Blo15g00358 . . Bpe07g00736 . . . . . . Cma13g01043 . Car13g00875 . . . Bhi08g01202 . . . . . . Cla04g01112 Cam04g1164 Cec01g1675 Cco01g1723 Clacu04g1192 Cmu04g1172 Cre01g1470 . . . .
Vvi17g757 Blo04g00734 . . . . . . . . Cmo18g00128 . . . . . . . . . . . . . . . . . . . . . . Cone16ag0101 Cone13ag0142 . Lsi02g00371 Csa01g00852 Chy12g01267 Cme12g01694 . . . Bda14g00811 . Bpe15g00638 Bma03g00781 . . . . . Cma18g00170 . Car18g00161 Cpe09g01025 . Bhi08g01609 Tan05g2008 . Lac10g0449 Hepe07g2227 . . Cla01g01300 Cam01g1429 Cec01g1464 Cco01g1460 Clacu01g1366 Cmu01g1272 Cre01g1264 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005817 1 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 3 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00371 Lsi_Chr02 FPKM 88.93679 96.216446 59.944252 60.284126 17.375925 17.301563 16.310143 73.184509 73.925743 74.550652