Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00374 ATGGAGGAAACATTTTTTCCATTTCGTGGGATTAAGAATGATATCAAAGGAAGACTTCTGTGCTACAGACAGGATTGGACTGGCGGCTTTCGTGCCGGTATCAGGATTTTGGCTCCAACAACGTACATATTCTTTGCTTCAGCAATTCCAGTTATATCGTTCGGGGAGCAGCTAGAAAGGAATACGTACGGGACTCTAACTGCTGTACAAACTCTAGCATCAACAGCACTTTGTGGCATTATCCACTCAGTCTTTGGGGGACAACCTCTGCTCATCCTTGGCGTTGCCGAACCAACTGTTTTGATGTATACATTCATGTTCGACTTTGCAAAGGACCGAAAGGAACTGGGGCAGGAACTATTCTTAGCCTGGACGGGATGGGTATGTGTATGGACAGCCATCTTGCTTTTCTTGCTTGCGGTGTTGGGTGCATGCTCCCTGATCAATAGGTTCACACGTCTTGCTGGAGAATTGTTTGGTCTGCTTATTGCCATGCTTTTCATGCAGCAGGCGATACGTGGTGTTGTGGAGGAATTTGGCATACCCCAAAGGGAAAATCCTAATCAGGTGGCGCTCCAACCTCCTTGGCGCTTTGGCAATGGAATGTTTGCATTGGTGCTGTCCTTTGGGCTTCTGCTAACTGCCCTTAAAAGCCGCAAGGCTAGATCATGGCGCTATGGGACTGGTTGCTTACGTGGCCTTATCGCTGATTATGGAGTTCCACTTATGGTGCTCGTATGGACAGCCTTATCTTACATTCCAGTCAACAATGTCCCACTTGGGATCCCAAGAAGGCTTTTCAGTCCCAATCCATGGTCTCAGGGTGCCTACTCAAATTGGACGGTTATAAAGGAAATGTTGAGAGTGCCTCCAATGTATATAGTTGGAGCATTCATACCAGCAACCATGATAGCAGTTCTTTACTACTTTGATCACAGTGTTGCATCTCAACTTGCCCAACAGAAAGAGTTTAATTTGAAAAAACCAGCTTCATATCATTATGATCTTCTCCTCCTAGGTTTCCTTGTCATCCTGTGTGGACTTATAGGCATACCACCTTCTAATGGTGTAATTCCTCAGTCTCCGATGCACACGAAAAGCTTAGCTACACTAAAACATCAGCTTTTGCGGAGCAAGCTGGTAGCAGCAGCGCGACAAAGTTTCCGTAAAAATTCGAACTTGAGTCAATTATACCGGAACATGCAAGAGGCATATAATGAGATTCAGACTCCTTTAATTTATCAAAATCCACCAGCTGTGGGGCTGAAGGAGTTGAAGGATTCCACGATCCAACTAGCTTCAAGAACTGGCTACATTGATGCACCTGTTGATGAAACTGTTTTCGATGTGGACAAAGATATTGATGATCTTCTGCCAGTAGAAGTTAAAGAACAACGTCTCAGCAATTTGCTTCAGGCAGTAATGGTTGGTGGTTGTGTTGCTGCTATGCCTCTTTTAAAGAAGATCCCAACTTCGGTTCTTTGGGGCTACTTCGCTTTCATGGCAATCGAGAGCTTGCCCGGAAATCAATTCTGGGAAAGGATTTTACTTCTTTTCACTGCTCCGAACCGAAGATACAAGGTGCTGGAGGAATATCATGCAACCTTTCTAGAAACTGTCCCCTTCAAAACAATTGCCACTTTCACCTTGTTTCAGACAGTATATTTGCTGATGTGTTTTGGATTAACCTGGATTCCAATTGCTGGTGTTCTTTTTCCGCTGTTGATCATGCTTCTTGTCCCTGTGCGCCAGTATTTGCTCCCCAAGTTCTTCAAAGGTGCTCATCTTCAGGACTTGGATGCTGCTGAATATGAGGAAGCCCCTGCAATTGCTTTTAATCCGTCATTCGAAGATCGAATGGGAAGAACTCCCAACATTGATGACGGTGAAATACTCGACGAGATGATCACAAGAAGCCGTGGCGAGATTCGACGTACACAAAGTTCAAAAGTGACAAGCTCATCCCCAACTTCTCTAGAGGGCATCAAACCTGCCTACAGCCCACAGATACCACAGAAACTGTACAGTCCACGGTTCAATGAGCTGAGAAAAGAGAGAAGTTCTCTATCTCCTGGAAAAGGACTTGAGTTTAAGCTAAATTCTAGTCCAAGTCCAAGTCGTAGTGAAGAACCAGGGCCAGGACCTTCTTTTAGAAATTAG 2160 44.91 MEETFFPFRGIKNDIKGRLLCYRQDWTGGFRAGIRILAPTTYIFFASAIPVISFGEQLERNTYGTLTAVQTLASTALCGIIHSVFGGQPLLILGVAEPTVLMYTFMFDFAKDRKELGQELFLAWTGWVCVWTAILLFLLAVLGACSLINRFTRLAGELFGLLIAMLFMQQAIRGVVEEFGIPQRENPNQVALQPPWRFGNGMFALVLSFGLLLTALKSRKARSWRYGTGCLRGLIADYGVPLMVLVWTALSYIPVNNVPLGIPRRLFSPNPWSQGAYSNWTVIKEMLRVPPMYIVGAFIPATMIAVLYYFDHSVASQLAQQKEFNLKKPASYHYDLLLLGFLVILCGLIGIPPSNGVIPQSPMHTKSLATLKHQLLRSKLVAAARQSFRKNSNLSQLYRNMQEAYNEIQTPLIYQNPPAVGLKELKDSTIQLASRTGYIDAPVDETVFDVDKDIDDLLPVEVKEQRLSNLLQAVMVGGCVAAMPLLKKIPTSVLWGYFAFMAIESLPGNQFWERILLLFTAPNRRYKVLEEYHATFLETVPFKTIATFTLFQTVYLLMCFGLTWIPIAGVLFPLLIMLLVPVRQYLLPKFFKGAHLQDLDAAEYEEAPAIAFNPSFEDRMGRTPNIDDGEILDEMITRSRGEIRRTQSSKVTSSSPTSLEGIKPAYSPQIPQKLYSPRFNELRKERSSLSPGKGLEFKLNSSPSPSRSEEPGPGPSFRN 719
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3242172 3248433 + Lsi02G003740.1 Lsi02g00374 655116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00374 719 PANTHER ANION EXCHANGE PROTEIN 1 692 IPR003020 GO:0005452|GO:0006820|GO:0016020
Lsi02g00374 719 MobiDBLite consensus disorder prediction 638 719 - -
Lsi02g00374 719 Pfam HCO3- transporter family 202 373 IPR011531 GO:0006820|GO:0016021
Lsi02g00374 719 Pfam HCO3- transporter family 7 179 IPR011531 GO:0006820|GO:0016021
Lsi02g00374 719 Pfam HCO3- transporter family 460 550 IPR011531 GO:0006820|GO:0016021
Lsi02g00374 719 MobiDBLite consensus disorder prediction 646 662 - -
Lsi02g00374 719 Gene3D Helical hairpin bin 18 60 - -
Lsi02g00374 719 PANTHER BORON TRANSPORTER 2-RELATED 1 692 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00374 Lsi-Chr2:3242172 Lsi03g01144 Lsi-Chr3:21678123 0 dispersed
Lsi02g00374 Lsi-Chr2:3242172 Lsi08g01171 Lsi-Chr8:20326857 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00374 K24194 - csv:101203606 1369.37