Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00376 ATGCTTAATTCCCCAATTTTAAGCGTCCTTTTAATCCTTCATTCTTGCTATTGCATTGCGCCACCAACCACTGCTTCACCAACCTTTCTCCTCGGCGGACGCTCCGAGGCCCTTCTCTTTTGCTTCGTCCTCTTCTCCGATCTCAGATCTCGAGCTCAAGCCTTCGAAATGCAGAGCTCTGCGGTCACCTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGCAGGCCTCATACTTCGTCCTTCAGCCCTGGATGTAACTCAATTCGGTTATCTTCTTCGTCTTCTTCAAATTCCAGAGATCTCGGAGACCTGAACAATGTTGGCCTCCCTTCCTCTTGGCCCCGGCGATCTTGGACTCTGTCATCGTCTCCTTTTTCGTCATCGAAACTCCGTCCATGGACCGGTGTGCCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCCACTGCGGTGCCGGATAGCTCAGGGGACGCCGAGAGTGCTGGGGGAAGCCTAACGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTATCCGTTCCCTGTAACTGTCACTGCAGTTCAATTTGCTGTAGGCACTGTACTTGTTCTTCTTATGTGGGGACTCAATCTCTACAAAAGACCAAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTTCCGCTGGCATTTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTGGGAAAAGTGGCGGTATCGTTCACTCACACAATCAAAGCTATGGAGCCATTTTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGAAAAATGCTGGTGTTGTTGTATCTCTTAAGGCCATTGTTGGTGGTGTCTTAACTCTGAATTTTGTATTTATGTCCTTGAAGACTCCTACTCCCTGGGTCGTTGCATCCCTTCTGCCAATCGTAGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGCGCAATGGCATCCAATGTGACTAATCAATCTCTTGTATTGATTTGGAACTCATGTTCTACATCTAATGGAGGAGAAAATATTGTTCATAGCAAATGTCTGTGTCTTTGCGGGAATGGTGAAAGTAACAACATTTTGTTCTTGAAACAGGAGTCAATTGACAACATCACCCTCTTTTCCATTATAACAGTCATGTCCTTTTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGCGTCAAGTTTACTCCTGCATACCTTCAATCTGCTGGATTGAACGTGAATCAACTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCTTACCAACAAGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTGACCCACTCAGTAGGCAATTGTGTAAAACGTGTTGTGGTCATTGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCCCTTGCTGGGGTTTTCCTGTATTCAAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACTGCTTAA 1587 46.12 MLNSPILSVLLILHSCYCIAPPTTASPTFLLGGRSEALLFCFVLFSDLRSRAQAFEMQSSAVTFSPSLPLLKPRRPHTSSFSPGCNSIRLSSSSSSNSRDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPSLASDSDASHFKVQATAVPDSSGDAESAGGSLTKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEKNAGVVVSLKAIVGGVLTLNFVFMSLKTPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSLVLIWNSCSTSNGGENIVHSKCLCLCGNGESNNILFLKQESIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNVNQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA 528
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 3252077 3256220 - Lsi02G003760.1 Lsi02g00376 655118
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00376 528 PANTHER SOLUTE CARRIER FAMILY 35 316 358 - -
Lsi02g00376 528 SUPERFAMILY Multidrug resistance efflux transporter EmrE 218 307 - -
Lsi02g00376 528 Pfam Triose-phosphate Transporter family 395 516 IPR004853 -
Lsi02g00376 528 Pfam Triose-phosphate Transporter family 314 358 IPR004853 -
Lsi02g00376 528 Pfam Triose-phosphate Transporter family 174 304 IPR004853 -
Lsi02g00376 528 PANTHER SOLUTE CARRIER FAMILY 35 115 303 - -
Lsi02g00376 528 PANTHER SOLUTE CARRIER FAMILY 35 392 503 - -
Lsi02g00376 528 MobiDBLite consensus disorder prediction 75 101 - -
Lsi02g00376 528 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 115 303 - -
Lsi02g00376 528 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 392 503 - -
Lsi02g00376 528 SUPERFAMILY Multidrug resistance efflux transporter EmrE 440 519 - -
Lsi02g00376 528 MobiDBLite consensus disorder prediction 79 101 - -
Lsi02g00376 528 PANTHER TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED 316 358 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00376 Lsi-Chr2:3252077 Lsi04g01225 Lsi-Chr4:18936200 8.46E-54 dispersed
Lsi02g00376 Lsi-Chr2:3252077 Lsi02g01577 Lsi-Chr2:21666721 1.37E-100 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00376 K15283 - csv:101203848 663.299