Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lsi02g00376 | ATGCTTAATTCCCCAATTTTAAGCGTCCTTTTAATCCTTCATTCTTGCTATTGCATTGCGCCACCAACCACTGCTTCACCAACCTTTCTCCTCGGCGGACGCTCCGAGGCCCTTCTCTTTTGCTTCGTCCTCTTCTCCGATCTCAGATCTCGAGCTCAAGCCTTCGAAATGCAGAGCTCTGCGGTCACCTTCTCGCCTTCTCTTCCTCTTCTCAAGCCTCGCAGGCCTCATACTTCGTCCTTCAGCCCTGGATGTAACTCAATTCGGTTATCTTCTTCGTCTTCTTCAAATTCCAGAGATCTCGGAGACCTGAACAATGTTGGCCTCCCTTCCTCTTGGCCCCGGCGATCTTGGACTCTGTCATCGTCTCCTTTTTCGTCATCGAAACTCCGTCCATGGACCGGTGTGCCCTCGCTTGCTTCGGATTCCGATGCGAGTCATTTCAAGGTTCAGGCCACTGCGGTGCCGGATAGCTCAGGGGACGCCGAGAGTGCTGGGGGAAGCCTAACGAAAACGTTGGAGCTCGGGTTGTTGTTTGGCCTCTGGTACCTTTTCAACATCTACTTTAACATCTACAACAAGCAGGTTCTCAAGGTGTATCCGTTCCCTGTAACTGTCACTGCAGTTCAATTTGCTGTAGGCACTGTACTTGTTCTTCTTATGTGGGGACTCAATCTCTACAAAAGACCAAAGATTAGTGGTGCTCAGCTTGCTGCTATTCTTCCGCTGGCATTTGTTCACACATTGGGAAATCTTTTCACAAATATGAGTCTGGGAAAAGTGGCGGTATCGTTCACTCACACAATCAAAGCTATGGAGCCATTTTTTTCAGTTATCCTGTCAGCAATGTTTCTTGGAGAGAAAAATGCTGGTGTTGTTGTATCTCTTAAGGCCATTGTTGGTGGTGTCTTAACTCTGAATTTTGTATTTATGTCCTTGAAGACTCCTACTCCCTGGGTCGTTGCATCCCTTCTGCCAATCGTAGGTGGTGTTGCATTGGCATCTGCCACTGAGGCCTCCTTCAACTGGGCTGGGTTTTGGAGCGCAATGGCATCCAATGTGACTAATCAATCTCTTGTATTGATTTGGAACTCATGTTCTACATCTAATGGAGGAGAAAATATTGTTCATAGCAAATGTCTGTGTCTTTGCGGGAATGGTGAAAGTAACAACATTTTGTTCTTGAAACAGGAGTCAATTGACAACATCACCCTCTTTTCCATTATAACAGTCATGTCCTTTTTCTTACTATCCCCTGTGGCCATCTTCATGGAAGGCGTCAAGTTTACTCCTGCATACCTTCAATCTGCTGGATTGAACGTGAATCAACTATACATTAGGTCTCTTCTTGCTGCCCTTTGTTTCCATGCTTACCAACAAGTTTCTTACATGATATTGCAAAGAGTATCGCCTGTGACCCACTCAGTAGGCAATTGTGTAAAACGTGTTGTGGTCATTGTGAGCTCTGTTATCTTCTTCCAAACACCTGTTTCTCCAATCAACTCTCTTGGCACTGGAATAGCCCTTGCTGGGGTTTTCCTGTATTCAAGGGTTAAGCGCATCAAAGCTAAGCCGAAGACTGCTTAA | 1587 | 46.12 | MLNSPILSVLLILHSCYCIAPPTTASPTFLLGGRSEALLFCFVLFSDLRSRAQAFEMQSSAVTFSPSLPLLKPRRPHTSSFSPGCNSIRLSSSSSSNSRDLGDLNNVGLPSSWPRRSWTLSSSPFSSSKLRPWTGVPSLASDSDASHFKVQATAVPDSSGDAESAGGSLTKTLELGLLFGLWYLFNIYFNIYNKQVLKVYPFPVTVTAVQFAVGTVLVLLMWGLNLYKRPKISGAQLAAILPLAFVHTLGNLFTNMSLGKVAVSFTHTIKAMEPFFSVILSAMFLGEKNAGVVVSLKAIVGGVLTLNFVFMSLKTPTPWVVASLLPIVGGVALASATEASFNWAGFWSAMASNVTNQSLVLIWNSCSTSNGGENIVHSKCLCLCGNGESNNILFLKQESIDNITLFSIITVMSFFLLSPVAIFMEGVKFTPAYLQSAGLNVNQLYIRSLLAALCFHAYQQVSYMILQRVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINSLGTGIALAGVFLYSRVKRIKAKPKTA | 528 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 3252077 | 3256220 | - | Lsi02G003760.1 | Lsi02g00376 | 655118 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lsi02g00376 | 528 | PANTHER | SOLUTE CARRIER FAMILY 35 | 316 | 358 | - | - | |
| Lsi02g00376 | 528 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 218 | 307 | - | - | |
| Lsi02g00376 | 528 | Pfam | Triose-phosphate Transporter family | 395 | 516 | IPR004853 | - | |
| Lsi02g00376 | 528 | Pfam | Triose-phosphate Transporter family | 314 | 358 | IPR004853 | - | |
| Lsi02g00376 | 528 | Pfam | Triose-phosphate Transporter family | 174 | 304 | IPR004853 | - | |
| Lsi02g00376 | 528 | PANTHER | SOLUTE CARRIER FAMILY 35 | 115 | 303 | - | - | |
| Lsi02g00376 | 528 | PANTHER | SOLUTE CARRIER FAMILY 35 | 392 | 503 | - | - | |
| Lsi02g00376 | 528 | MobiDBLite | consensus disorder prediction | 75 | 101 | - | - | |
| Lsi02g00376 | 528 | PANTHER | TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED | 115 | 303 | - | - | |
| Lsi02g00376 | 528 | PANTHER | TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED | 392 | 503 | - | - | |
| Lsi02g00376 | 528 | SUPERFAMILY | Multidrug resistance efflux transporter EmrE | 440 | 519 | - | - | |
| Lsi02g00376 | 528 | MobiDBLite | consensus disorder prediction | 79 | 101 | - | - | |
| Lsi02g00376 | 528 | PANTHER | TRIOSE PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR-RELATED | 316 | 358 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lsi02g00376 | Lsi-Chr2:3252077 | Lsi04g01225 | Lsi-Chr4:18936200 | 8.46E-54 | dispersed | |
| Lsi02g00376 | Lsi-Chr2:3252077 | Lsi02g01577 | Lsi-Chr2:21666721 | 1.37E-100 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lsi02g00376 | K15283 | - | csv:101203848 | 663.299 |