Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00381 ATGTCAAGAACATCACTCCTAATTCCTCTCTCCCTCTCTCTCATCCTTTCATCTCTTCCACTATTCAGTTCCACCACCAATATCCACTCCGACGCCTGCCGCTCCTTCTGCGGCAACATCACCGTCGACTATCCCTTCGCTCTCCAATACGGTTGCGGCCATCCCGGCTACCGCGACCTTCTATACTGTATGAACGATGTTTTAATGTTCCACATCCGATCCGGATCCTACAGAGTGTTAGACATCGATTACGCTTACGAAGCCCTAACTCTCCACGATCCTCACATGTCGACCTGCGATACCATCGTCCTCGGCGGTCGAGGCAACGGCTTCGATATCGAGGAGTGGCGGTCGCCTTACCTGAATCCGACGGCCGATAACGCCTTTCTCCTCATCGGCTGCTCCGCCCAATCGCCGCTCTTCCAAGGGTTCCCAAACAAGCATCTAGTCTGCAGAAACATTTCGGGAATGGGTTGTGAGGAGTATTACGACTGTCCGGCTTGGGATTTATTGGGCCACAGAAGACCGGGCCGGGTTTATGGGTCCGGTCCACCAGAGTGCTGTGCGGTTCCTTTTGGGTCCATTAAGGCTATAAATCTCACGAAGCTTCAGTGTGAAGGATATAGTAGTGCCTATAGTTTGGCTCCGTTGAGGATTAATGGGCCTGATGAGTGGGCCTATGGGATTCGTGTGAAATATTCGGTCCAAGCAAATGAAGACCTTTGTCGAGCGTGCCAAGCCACTGGTGGCACGTGCGGTTATGAGCTCGTTACCAAGGCGGATGACATCATGGACAATAATCAAGGGCATCTTAGCAGGGCCAAAGCTTCGCATCGATTTCCATTACCAATGGCGTTTTCTTCTCGTCTATCTCCGATTTCGTTGCCGCCTTCTTTCACTTCCCATTCTGAAGCAGCTTCTCTGTGTTTTACGACATTCGATTGTCTAAGTCCTCAAAAAAGGCGAAGCTGTACCAAGTTTCGGGGTTTGAATTTCCACCTTCCGCCTTCGATTTCGGCTTCAAGAACGGTGGCCGCCGGTGCTGTGTCGCCGGCAGCAGTTGCAAATTCGAGCGGGACAGTTACTTCATTCAGTAATTTGATTGAATCTTTGATTAATCGCGTGGATTTGTCGGAGGATGAAGCGGAGGCGTCTCTTCAGTATCTTCTTAACGATGCCAGCGAGGCATCAATTAGTGCTTTCCTTGTGTTACTCAGAGCCAAAGGAGAGACTTATGAAGAAATTGTGGGACTTGCGAGGGCGATGATCAAGCACAGTGTGAAGGTGGATGGCTTATTTGATGCCATTGACATTGTTGGAACAGGTGGTGATGGAGCGAACACAGTAAACATCTCAACTGGTGCTTCAATACTAGCTGCAGCATGTGGCACAAAGGTTGCGAAGCAAGGGAACCGTTCGAGTTCTTCGGCATGTGGAAGTGCTGATGTCTTAGAGGCATTGGGGGTAGTTATTGATTTGGGACCTGAGGGAGTTGCCAAGTGTGTTGATGAAGTTGGAATTGGCTTCATGATGGCTCCCAAATACCATCCTGCAATGAATATTGTCAGTCCTATCAGGAAGAAGCTAAAAGTGAAAACTGCATTTAACGTACTGGGCCCTATGCTTAATCCGGCTAGAGTCCCCTTTGCTGTTGTTGGTGTATATTCTGAGAACTTAGTCTCCAAAATGGCTAAAGCTCTGCAACTATTTGGCACGAAAAGAGCATTAGTAGTTCACTCTGAGGGTTTGGATGAGATGAGTCCCCTTGGACCAGGATTTATTCTTGATGTAACGCCCGAAAAGATTGAAAAGTTTGCATTTGATCCGTTGGATTTTGGCATCCCTCGCTGCACCATAGATGACCTTCGAGGGGGAGACCCCGATTATAATGCAGAGGTGTTGAAGCGCGTGTTATCCGGGGAAAAGGGGCATATTGCAAATGCACTTATCCTGAATGCTGCTGCTGCCCTTCTGGTTAGCTGCAAAGTAACCACCTTGGCCAAGGGAATCGAGTTGGCTCGGGAAACTCAACAGTCTGGAAAAGCCATGAAGACCCTTGATTTGTGGATAGAACTCTCCAATGTAAAAGCTAAAAGAAGTGTATGCCTAGGAGCACTTAAACTTGAGCTGCTGAGTAAGGATCAAGAAGACTGA 2154 48.65 MSRTSLLIPLSLSLILSSLPLFSSTTNIHSDACRSFCGNITVDYPFALQYGCGHPGYRDLLYCMNDVLMFHIRSGSYRVLDIDYAYEALTLHDPHMSTCDTIVLGGRGNGFDIEEWRSPYLNPTADNAFLLIGCSAQSPLFQGFPNKHLVCRNISGMGCEEYYDCPAWDLLGHRRPGRVYGSGPPECCAVPFGSIKAINLTKLQCEGYSSAYSLAPLRINGPDEWAYGIRVKYSVQANEDLCRACQATGGTCGYELVTKADDIMDNNQGHLSRAKASHRFPLPMAFSSRLSPISLPPSFTSHSEAASLCFTTFDCLSPQKRRSCTKFRGLNFHLPPSISASRTVAAGAVSPAAVANSSGTVTSFSNLIESLINRVDLSEDEAEASLQYLLNDASEASISAFLVLLRAKGETYEEIVGLARAMIKHSVKVDGLFDAIDIVGTGGDGANTVNISTGASILAAACGTKVAKQGNRSSSSACGSADVLEALGVVIDLGPEGVAKCVDEVGIGFMMAPKYHPAMNIVSPIRKKLKVKTAFNVLGPMLNPARVPFAVVGVYSENLVSKMAKALQLFGTKRALVVHSEGLDEMSPLGPGFILDVTPEKIEKFAFDPLDFGIPRCTIDDLRGGDPDYNAEVLKRVLSGEKGHIANALILNAAAALLVSCKVTTLAKGIELARETQQSGKAMKTLDLWIELSNVKAKRSVCLGALKLELLSKDQED 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3283178 3292594 + Lsi02G003810.1 Lsi02g00381 655123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00381 717 Pfam Glycosyl transferase family, a/b domain 434 682 IPR000312 GO:0016757
Lsi02g00381 717 Gene3D Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 432 700 IPR035902 -
Lsi02g00381 717 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 434 691 IPR035902 -
Lsi02g00381 717 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE 342 700 IPR005940 GO:0000162|GO:0004048
Lsi02g00381 717 TIGRFAM trpD: anthranilate phosphoribosyltransferase 368 691 IPR005940 GO:0000162|GO:0004048
Lsi02g00381 717 PANTHER ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE, CHLOROPLASTIC-LIKE ISOFORM X1 342 700 - -
Lsi02g00381 717 Hamap Anthranilate phosphoribosyltransferase [trpD]. 366 692 IPR005940 GO:0000162|GO:0004048
Lsi02g00381 717 Pfam Glycosyl transferase family, helical bundle domain 367 426 IPR017459 -
Lsi02g00381 717 Pfam Wall-associated receptor kinase galacturonan-binding 33 93 IPR025287 GO:0030247
Lsi02g00381 717 SUPERFAMILY Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain 364 430 IPR036320 -
Lsi02g00381 717 Gene3D Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 366 429 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00381 K00766 trpD; anthranilate phosphoribosyltransferase [EC:2.4.2.18] - csv:101204330 704.131
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00381 Lsi-Chr2:3283178 Lsi05g01393 Lsi-Chr5:21799793 5.64E-34 dispersed
Lsi02g00381 Lsi-Chr2:3283178 Lsi02g00574 Lsi-Chr2:5138407 5.65E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g770 . . . . . . . . . . . . . . . Cpe20g00249 . . . . . . . . . . . . . . . Cone2ag0915 Cone16ag0093 . . Lsi02g00381 Csa01g00861 Chy12g01260 Cme12g01685 . . . . . . . . Sed08g2521 . . . . Car13g00720 . . . Bhi08g01624 Tan05g1995 Cmetu12g2030 Lac10g0459 Hepe07g2218 . . Cla01g01308 Cam01g1422 Cec01g1456 Cco01g1468 Clacu01g1373 Cmu01g1281 Cre01g1258 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009653 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00381 Lsi_Chr02 FPKM 0.0 0.36463 1.509419 0.0 2.010479 2.388713 4.149364 1.685442 0.0 0.0