Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00387 ATGCTAGGAATTAGTGCACGAAGGTTTTGTGTAATAATAATTGATAAGCTTTTGCTAGATGCGGAATACGTAGTTGCCTTTGTGCACTATTCAAGTTACATGCTTTCAGCGGGCATGGGTAGTCATGATACTCGTAATTATTCAGCTCCTCCAAATGGTTCTTATGCAGAATTTTCATCAAGATTGTCATCCGGGAATGCCTCTTTGAATTTAAAACAGTGTGTAACATCCATTCGCACAGTTGGGAGAACTGAACACCGTGCACCATTGAGGAGCAATATTTGTTTAAGTTTCTCTGATGTGCATGGGTATCCTTGTGTCATATTTAAAGTAATGTATGGATCCTTGTCCCACAAACTCATGGAACTTATTTTCAGTGTAGGGACTCCTCGATTATGTGGCCCAAGACCTAATCTCTCGAGAGTTTCTGCCTTCAAAAGCAGTGCTCGTATAGATGATGAGACAGGTGGAGTAGCAAATGGATCCAAGATTTCCAGCTTCTCTGTAAAGCTTAAAGATGGTGATTATTGTACAGAAACTCCAAAGGCAAACAATGTTCCACTTTGCTATGCCTCTGGAGCAAATGAGGATATTGCTCCATCCCCTGCTATTCAAAAATTGTTCAAGAAATGGTTGGAATTGTTGCGCAGACAACCTGTAAGTCAAGATGTGGATGGGATTCTGGAGGATCTGCCCTCAGCAGAGATGTCAGATACCCAGCAAGAGTCCAATAAAAAGGAAAACAGCGAGATTCTTCGAGGGGTTTGGTTCCACTTTCTGGGACTTAATGCAGCAGTGAAGATACCTTTGCTAATATTATCTTTACCAAGAGCAAAGGCTAGATCCGGTCTCTTTCTCACATTATCTAAGAAGCATGATTCTTCATTAAGGCAGGGCTGGCCGACCACTTTTAATGTGGGATTCTTGGTGTTTAATGAGCTAATGAAGGATCAGAACAACTTGAGTTGTCTGATTTTTGTGATTGTTGTGATGAGGATGTAG 1002 41.22 MLGISARRFCVIIIDKLLLDAEYVVAFVHYSSYMLSAGMGSHDTRNYSAPPNGSYAEFSSRLSSGNASLNLKQCVTSIRTVGRTEHRAPLRSNICLSFSDVHGYPCVIFKVMYGSLSHKLMELIFSVGTPRLCGPRPNLSRVSAFKSSARIDDETGGVANGSKISSFSVKLKDGDYCTETPKANNVPLCYASGANEDIAPSPAIQKLFKKWLELLRRQPVSQDVDGILEDLPSAEMSDTQQESNKKENSEILRGVWFHFLGLNAAVKIPLLILSLPRAKARSGLFLTLSKKHDSSLRQGWPTTFNVGFLVFNELMKDQNNLSCLIFVIVVMRM 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3315095 3320330 - Lsi02G003870.1 Lsi02g00387 655129

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00387 333 PANTHER DEFECTIVE 2759, PUTATIVE ISOFORM 1-RELATED 123 273 - -
Lsi02g00387 333 PANTHER DEFECTIVE 2759, PUTATIVE ISOFORM 1-RELATED 52 98 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00387 - - - cmo:103483645 336.265
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00387 Lsi-Chr2:3315095 Lsi06g01564 Lsi-Chr6:26068330 6.65E-19 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g780 . . . . . . . Bma12g01044 Cmo13g00909 Cmo18g00138 . . . . . Cpe20g00251 . Bhi02g00474 . . . Hepe09g0212 . . Cla06g01672 . Cec06g1910 Cco06g1915 . . . Cone2ag0918 Cone16ag0089 . . Lsi02g00387 Csa01g00866 Chy12g01256 Cme12g01680 . . . . Bpe07g00847 . . Bma08g00092 . . . Cma13g00878 Cma18g00180 . Car18g00171 Cpe09g01015 . Bhi08g01637 . . . . . . Cla01g01312 Cam01g1417 Cec01g1450 Cco01g1473 Clacu01g1377 Cmu01g1287 Cre01g1254 . . . Cme02g01987
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003399 0 8 0 1 1 1 1 2 2 1 2 1 2 2 2 2 1 3 2 1 1 1 2 1 2 1 1 2 2 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00387 Lsi_Chr02 FPKM 5.467866 4.223847 57.833858 57.333485 4.554886 3.587713 4.19914 1.427726 1.163934 1.156491