Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00388 ATGGATCTCAAGTCGCCTTCGAAACTTAAGCCATCATCAACGAGATTCTCTAAGAATAAATGGATATTAAACATAACTGTTATTGTCGTAGTAACATTTGTGATTTCACGTGGTGCAATTTTGGCATATAAGTCTCGAATTTCTAATGCACCAAAAGAGCTTTATTATACTGTGGTCGTGGACTGTGGAAGCACGGGCACACGAATAGATGTATATGAATGGAAATGGGGGGTGAAGAGTGGTAGTGACTTGCCTGTTTTATTGCATTCTTATCCTAACAATTCAACTAAAAGTCCGCTTCGAAAGAAATCTTGTAGTTACCACTGTATGCAAACCCAGCCGGGGTTAGATAAATTTGTCGGGAATATTTCAGGTGTAAGGGCTTCTTTAAAACCATTGATCGATTGGGCAGAACAAGAGATACCGGTTGAAAAACATTCACTTACTCCTATTTTTGTTTTATCTACTGCTGGACTGAGGAGATTGGCAAATGAGGATGCCAAGCAGGTTTTGGAAGATATCGAGGCTGTTATAAAGGAGCATTCTTTCATGTATCGAAAAAGTTGGATAAGAGTGCTGAGTGGTATAGAAGAAGCTTATTATGGTTGGGTTGCTTTAAATTACAGAATGGGGAGCTTTAGAAACTCAAGGTCAGGCACGTTGGGAATTCTTGATTTGGGTGGTTCCTCGTTGCAGGTTGTGATGGAATCAGACCGTAAAAGGGAAGAAAAGGAAGAAATGAAGTTCATGAGATCAAAAGTTGGGTCCATTGAGCATCAGGTTTTGGCTTTCTCATGGGAAGCTTTTGGTTTGAATGAGGCATTTGATAGGACTCTTGTTTTGCTCAATCAAACACAGGTACTTGGAGAAAGTAACATGACTACAATTGAGCTCAGACATCCTTGTCTTAGTTCAAGTTTTATGCAAAATTATACATGCTACAATTGTTTAAGTCATGACAACTCGGGCCAGGAAAAATTGAGTCATCACATCAGCAAAACTGGCTTTCCTATTTATTTAATCGGGAACCCAAATTGGGAGCAGTGTAAACGAATTGCAAGGGCTGCTGCAATCAATTCCAGCACTATAGTTTGGTCAGAGCCTATAGACGCTTCAAAATGTCTTGCTAGCTCGCCATCTTCAATCGGCGGAAATAATACAGTTGTGGCCATTCCTACCACACGTTTTCATGCTCTATCAGGATTCTTTGCAGTATATCAATCATTAAATCTGTCTACAAGAGCCAATTGGACAAACATATGGGAAAGAGGTCTGGAGTTATGCTCTGCTTCTGAAGCTGATATGATGAGAAGTATTTCAGCAAACCAAAGTAGTTTGTGGCAATATTGTTTCCAGTTACCTTATATGGCATCACTCATTGAGGATGCTCTCTGTCTTGGCAATAAAGAAGTGATTTTTGGCCCTCCAGATGTCTCCTGGACTCTAGGAGCCGCGTTGATAGAGGGAGAGTACTTATGGTCAAGTTCAAGTACAACAACTACAGCTGAAAATCACAATTCAACTTTGGGAAAAATTGAGCCTGTATATGTATTTTTGTTACTTCTGTGTCTTCTATTGGTTGTTTATTATAATCAAATCAAGCTGCCTATGTTAGGCAGAAAGTCAGCTGCGGCCGGGGCATCTCTGCCATCTTATGCCCTTCCAAAACACAGGCCGAACTGA 1683 40.34 MDLKSPSKLKPSSTRFSKNKWILNITVIVVVTFVISRGAILAYKSRISNAPKELYYTVVVDCGSTGTRIDVYEWKWGVKSGSDLPVLLHSYPNNSTKSPLRKKSCSYHCMQTQPGLDKFVGNISGVRASLKPLIDWAEQEIPVEKHSLTPIFVLSTAGLRRLANEDAKQVLEDIEAVIKEHSFMYRKSWIRVLSGIEEAYYGWVALNYRMGSFRNSRSGTLGILDLGGSSLQVVMESDRKREEKEEMKFMRSKVGSIEHQVLAFSWEAFGLNEAFDRTLVLLNQTQVLGESNMTTIELRHPCLSSSFMQNYTCYNCLSHDNSGQEKLSHHISKTGFPIYLIGNPNWEQCKRIARAAAINSSTIVWSEPIDASKCLASSPSSIGGNNTVVAIPTTRFHALSGFFAVYQSLNLSTRANWTNIWERGLELCSASEADMMRSISANQSSLWQYCFQLPYMASLIEDALCLGNKEVIFGPPDVSWTLGAALIEGEYLWSSSSTTTTAENHNSTLGKIEPVYVFLLLLCLLLVVYYNQIKLPMLGRKSAAAGASLPSYALPKHRPN 560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3322247 3325681 + Lsi02G003890.1 Lsi02g00388 655130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00388 560 Gene3D - 42 194 - -
Lsi02g00388 560 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 3 559 IPR000407 GO:0016787
Lsi02g00388 560 Pfam GDA1/CD39 (nucleoside phosphatase) family 51 486 IPR000407 GO:0016787
Lsi02g00388 560 Gene3D Exopolyphosphatase. Domain 2 195 473 - -
Lsi02g00388 560 PANTHER GDA1/CD39 NUCLEOSIDE PHOSPHATASE FAMILY PROTEIN 3 559 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00388 - - - cmo:103483706 985.326
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00388 Lsi-Chr2:3322247 Lsi07g00780 Lsi-Chr7:8588934 8.92E-86 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g782 . . . . . . . . Cmo13g00908 . . . . . . Cpe20g00252 . . . . . . . . . . . . . . . Cone2ag0919 Cone16ag0088 . . Lsi02g00388 Csa01g00867 Chy12g01255 Cme12g01679 . . . . . . . . . . . Cma13g00875 . Car13g00717 . . . Bhi08g01639 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013004 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00388 Lsi_Chr02 FPKM 8.914059 8.560523 13.988276 14.630827 31.167095 33.006466 31.83506 24.602612 23.597643 22.802189