Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00390 ATGGAGAATCCGAAATTATCAATCTTTCTTGTCAACCTCTTGTGTTTTCTCTGTCTTTGCATCGCCATTGAATCACCCCAATACGCTGTTGTTCATTCAGAATCAGACTTCGAAATCAGATTTTACAGAAAGTCCACTTGGATGTCTGCTCCTGTCCAAGACCCATCCTTCGAGAAAGCTACGAAAAATGGTTTCCACAGACTGTTCCAATACATACAAGGTGCTAATCTGAATTGGTCAAGGATTGCCATGACTGCTCCTGTCTTGATAAGCATTATCCCTGGGGCTGGCCCTCTTCACTCCTCCTCTTATCTTGTTCAATTCTATCTGCCACTTAAGTTTCAAGCTTCACCCCCTCTTCCTCTTCCTGAACTGAAACTGAAGCCCTGTGGTTGGGAAGCTCATTGTGTTGCAGTTAGAAAGTTCTCTGGATTTTCAAGGGATGAGAAGGTCATAAAGGAAGCAGAGAAACTTGCCACCAGCTTGAGTAGGTTCCCTTTGGCGAATTCCACCTCTGAAAGGGGTTATGCATATGCCATTGCCCAATACGACTCTCCCTTCCGGTTGATCGGACGAGTTAATGAAGTCTGGGTCGATGTCGATGCAGCTGATTTGGATGGATGTAAATCCAGTGCCATTGCCGCATTCTAA 651 45.01 MENPKLSIFLVNLLCFLCLCIAIESPQYAVVHSESDFEIRFYRKSTWMSAPVQDPSFEKATKNGFHRLFQYIQGANLNWSRIAMTAPVLISIIPGAGPLHSSSYLVQFYLPLKFQASPPLPLPELKLKPCGWEAHCVAVRKFSGFSRDEKVIKEAEKLATSLSRFPLANSTSERGYAYAIAQYDSPFRLIGRVNEVWVDVDAADLDGCKSSAIAAF 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3326058 3327245 - Lsi02G003900.1 Lsi02g00390 655132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00390 216 Gene3D Regulatory factor, effector binding domain 22 207 IPR011256 -
Lsi02g00390 216 Pfam SOUL heme-binding protein 23 198 IPR006917 -
Lsi02g00390 216 SUPERFAMILY Probable bacterial effector-binding domain 13 200 IPR011256 -
Lsi02g00390 216 PANTHER SOUL HEME-BINDING PROTEIN-RELATED 11 209 - -
Lsi02g00390 216 PANTHER HEME-BINDING PROTEIN-RELATED 11 209 IPR006917 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00390 - - - csv:101204816 407.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00390 Lsi-Chr2:3326058 Lsi06g00919 Lsi-Chr6:18945513 1.15E-06 dispersed
Lsi03g02168 Lsi-Chr3:32782060 Lsi02g00390 Lsi-Chr2:3326058 7.46E-14 transposed
Lsi07g00853 Lsi-Chr7:9596976 Lsi02g00390 Lsi-Chr2:3326058 3.08E-35 transposed
Lsi02g00390 Lsi-Chr2:3326058 Lsi04g00573 Lsi-Chr4:5233131 2.47E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g784 . . Bda06g00608 . . . . . Cmo13g00907 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00390 Csa01g00868 Chy12g01254 Cme12g01678 . . . . Bpe07g00849 . . . Sed01g1635 . . Cma13g00874 . Car13g00716 . . . Bhi08g01640 Tan05g1989 Cmetu12g1788 Lac10g0470 . . . Cla01g01314 . . Cco01g1476 Clacu01g1380 Cmu01g1290 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014295 1 1 1 0 1 0 1 1 1 1 0 0 1 1 1 1 0 1 0 1 1 1 0 1 1 1 0 1 1 1 22
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00390 Lsi_Chr02 FPKM 18.662519 19.022867 9.180877 10.695598 13.590046 12.398376 17.17605 14.48942 13.668133 15.706255