Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00391 ATGTCATCAACATTGAGGGAAACTTCGAGATTAGCTGAGGCCTCAATCAATGGTATGGTTCGACGGATGGTTAATCTTCCAAGAAACATATTAGGAGGATTTTCAAGAGTTATGAGTGGAGGAAGAAGAAACCAGACTCTGCCATCCAGTTACCAATATCAGATTCTGCAGCAGGACACACCAAATGTCCCGGAAGAATGGTCTTTCCTGACCAGTTTCCAGAACCAGTATGACTCAGTGCACCCTTTTTTTTACGCCTGTCGATTTGCAGAAGCCATGAAGATGGCAGAAGATGAACACAAGTTTTTATTCTTGTATCTGCACTCACCAGATCACCCATTCACACCCTCTTTCTGCGAGGAGACACTGTGTTCAGAGCTAGTAGTGCAGTTTCTTGATGCTAACTTCATCTGTTGGGGAGTACTTGCAAACAGAGGAGATGGTCTACATATGGCTACAACATTAGGAGCTACCAGTTTTCCTTTCTGTGCCGTAATTGCTCCGGCTCCAGGCGAAAGCATAACAGTCCTACAACAGCTTGAAGGGCCAGTTTCTCCAGCTGAGTTGGTGGAGATTCTACAGAGGACAATTGAGGAGCAGGGATCAGCTTTTGGTAGCTCCAAACTGAAGCGAGAAGAAAAGATAAGAGCAGATCGCAGGATTAGAGAAGAGCAAGACAGAGCATATCATGCCGCTCTTAAAGAAGACAAGGAGAGGGAAAGACTTAAAAATCTACCGATGGTGTTACCGAAGAAAGCAAATGATGAGAGGCTCAAGCAGAATTCTCCAAATAAACAACAAGGTAGAGTGAAAGAACCTACTTTTACTCGTGAAACTCCGAACAAGGATCCTGCAAGTAAAGGAAAAGATTCTCAGCCTAGCTCCCAGATACTAATAAGATTTCCAAACGGTGAAAAGAGAGAGAAAAGCTTTTCAAGCATGGACAAGGTGAAATCAATTTACAGTTATATCAATTCGCTCGGCCTGCCAAGTACTGAAAACTATAGACTGATAGCAAGCTTTCCAAGAAGAGTATATGGTATGGATGAAATGAATATGACTCTGAAAGATGTTGGCCTTCACCCAAGAGCAAGTTTATTTCTGGAGTGTCAGTGA 1116 43.1 MSSTLRETSRLAEASINGMVRRMVNLPRNILGGFSRVMSGGRRNQTLPSSYQYQILQQDTPNVPEEWSFLTSFQNQYDSVHPFFYACRFAEAMKMAEDEHKFLFLYLHSPDHPFTPSFCEETLCSELVVQFLDANFICWGVLANRGDGLHMATTLGATSFPFCAVIAPAPGESITVLQQLEGPVSPAELVEILQRTIEEQGSAFGSSKLKREEKIRADRRIREEQDRAYHAALKEDKERERLKNLPMVLPKKANDERLKQNSPNKQQGRVKEPTFTRETPNKDPASKGKDSQPSSQILIRFPNGEKREKSFSSMDKVKSIYSYINSLGLPSTENYRLIASFPRRVYGMDEMNMTLKDVGLHPRASLFLECQ 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3328971 3331295 - Lsi02G003910.1 Lsi02g00391 655133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00391 371 MobiDBLite consensus disorder prediction 231 312 - -
Lsi02g00391 371 ProSiteProfiles UBX domain profile. 290 368 IPR001012 GO:0005515
Lsi02g00391 371 SUPERFAMILY Ubiquitin-like 288 369 IPR029071 -
Lsi02g00391 371 PANTHER FAS-ASSOCIATED PROTEIN 7 370 - -
Lsi02g00391 371 CDD UAS 89 199 - -
Lsi02g00391 371 Gene3D Glutaredoxin 61 203 - -
Lsi02g00391 371 SMART ubx_3 287 370 IPR001012 GO:0005515
Lsi02g00391 371 MobiDBLite consensus disorder prediction 271 285 - -
Lsi02g00391 371 CDD UBX 297 369 - -
Lsi02g00391 371 MobiDBLite consensus disorder prediction 231 259 - -
Lsi02g00391 371 Pfam UBX domain 292 369 IPR001012 GO:0005515
Lsi02g00391 371 SMART 45neu3 68 194 IPR006577 -
Lsi02g00391 371 SUPERFAMILY Thioredoxin-like 61 202 IPR036249 -
Lsi02g00391 371 Gene3D - 293 371 - -
Lsi02g00391 371 PANTHER UBIQUITIN-ASSOCIATED (UBA) PROTEIN-RELATED 7 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00391 K18726 FAF2, UBXD8; FAS-associated factor 2 - csv:101205471 672.159
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00391 Lsi-Chr2:3328971 Lsi09g00149 Lsi-Chr9:1505767 3.37E-45 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g788 Blo04g00728 . . . . . . . Cmo13g00906 . . . . . . Cpe20g00253 . . . . . . . . . . . . . . . Cone2ag0920 Cone16ag0087 . . Lsi02g00391 Csa01g00869 Chy12g01253 Cme12g01677 . . . . . Bpe15g00644 . . Sed02g1604 . . Cma13g00873 . Car13g00715 . . . Bhi08g01641 Tan05g1988 Cmetu09g0491 Lac10g0471 . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013011 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 0 1 1 1 0 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00391 Lsi_Chr02 FPKM 20.923504 21.559973 22.927271 21.457582 24.060764 27.448391 25.22187 39.725296 39.965206 36.710064