Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00392 ATGGCTTCTTCTTCAACTTCTTCTTCTTGTTCTTGTTCTTGTTCTTGTTTTGTTGTTTTCCTTCTGCTTTTTACTTCTTTCTCCTCTGTTTTCTCAACTTCCATATCCCATCAAATCCCACCAAAAAACCAAACTTTTTTCCACCCAGCTAAAGAGCTCAAGAAACTCAAGCACGTCAGAGCTTATTTACGCAAAATCAACAAGCCTCCAATCAAGACAATTCGGAGTTCAGATGGTGATGTTATAGACTGTGTTCTTTCTCATCTTCAGCCTGCTTTTGACCATCCTGAGCTCAAAGGGCAAGCTCCATTGGAACCACCTGAGAGGCCAAGAGGGAACAAATCCATGGAAGAAGTAGCAGAAAATTTCCAATTATGGTCAGTTTCAGGGGATTTTTGCCCTGAAGGAACAATTCCAATAAGAAGAACAACAGAAAAAGACATTTTCAGAGCAAGTTCTTTTCGAAGATTTGGAAGAAAACCCATTAGACATGTGAGAAGAGATTCTTCTGGGAATGGTCATGAGCATGCTGTGGTATTTGTGAATGGAGAACAATATTATGGAGCAAAGGCGAGTTTAAACATATGGGCGCCACGTGTAACTGATCAATACGAATTTAGTTTATCACAAATATGGGTAATTTCAGGGTCTTTTGGGAATGATTTGAACACCATTGAAGCTGGATGGCAGGTTAGTCCTGAACTGTATGGCGACAACAATCCTAGATTCTTTACGTATTGGACAACTGATGCTTATCAAGCCACTGGGTGTTATAATTTACTTTGTTCTGGGTTCGTTCAAACCAATAATAGGATCGCCATTGGAGCAGCAATTTCGCCTATATCTTCTTACAGTGGCAAGCAATTCGATATTGGTTTAATGGTTTGGAAGGTAAGTTCATTTACTGTTTCCCTTTTTTATTATTATTTTAATTCATTCATATTGAGTTCGTCGAATGATCCAAAGCACGGGCATTGGTGGTTGGAATACGGGTCGGGTTTGCTAGTCGGGTATTGGCCAGCATTTCTATTCAGCCATTTACGGAGCCATGCTAGCATGGTACAATTTGGAGGGGAAATAGTGAACAGCAGATCTTCAGGGTTTCATACAGCCACTCAAATGGGGAGTGGTCATTTTGCTGAAGAAGGGTTTGGAAAAGCTTCTTATTTCAGGAACTTGCAAGTAGTTGATTGGGATAACAATTTGCTTCCTCTTACAAATCTTCATCTCTTGGCTGACCATTCTGATTGCTATGATATTAGACAAGCCTCTAATAATGTTTGGGGCACTTATTTTTACTATGGAGGGCCTGGTAGAAATGTCAAATGCCCTTAG 1335 40.07 MASSSTSSSCSCSCSCFVVFLLLFTSFSSVFSTSISHQIPPKNQTFFHPAKELKKLKHVRAYLRKINKPPIKTIRSSDGDVIDCVLSHLQPAFDHPELKGQAPLEPPERPRGNKSMEEVAENFQLWSVSGDFCPEGTIPIRRTTEKDIFRASSFRRFGRKPIRHVRRDSSGNGHEHAVVFVNGEQYYGAKASLNIWAPRVTDQYEFSLSQIWVISGSFGNDLNTIEAGWQVSPELYGDNNPRFFTYWTTDAYQATGCYNLLCSGFVQTNNRIAIGAAISPISSYSGKQFDIGLMVWKVSSFTVSLFYYYFNSFILSSSNDPKHGHWWLEYGSGLLVGYWPAFLFSHLRSHASMVQFGGEIVNSRSSGFHTATQMGSGHFAEEGFGKASYFRNLQVVDWDNNLLPLTNLHLLADHSDCYDIRQASNNVWGTYFYYGGPGRNVKCP 444
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3342350 3345978 + Lsi02G003920.1 Lsi02g00392 655134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00392 444 Pfam Neprosin 204 437 IPR004314 -
Lsi02g00392 444 Gene3D - 196 312 - -
Lsi02g00392 444 PANTHER - 10 298 - -
Lsi02g00392 444 PANTHER - 319 444 - -
Lsi02g00392 444 Pfam Neprosin activation peptide 73 179 IPR025521 -
Lsi02g00392 444 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 10 298 - -
Lsi02g00392 444 PANTHER PROTEIN, PUTATIVE (DUF239)-RELATED-RELATED 319 444 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00392 - - - csv:101205708 744.962
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00392 Lsi06g01565 CCT
Lsi02g00392 Lsi06g01565 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00392 Lsi-Chr2:3342350 Lsi08g01655 Lsi-Chr8:24361053 0 dispersed
Lsi02g02633 Lsi-Chr2:32731885 Lsi02g00392 Lsi-Chr2:3342350 3.82E-42 transposed
Lsi06g00765 Lsi-Chr6:14590942 Lsi02g00392 Lsi-Chr2:3342350 1.16E-47 transposed
Lsi10g00921 Lsi-Chr10:13681668 Lsi02g00392 Lsi-Chr2:3342350 7.81E-135 transposed
Lsi02g00392 Lsi-Chr2:3342350 Lsi04g00574 Lsi-Chr4:5247896 5.58E-133 wgd
Lsi02g00392 Lsi-Chr2:3342350 Lsi06g01565 Lsi-Chr6:26105928 3.55E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g789 Blo04g00727 . . Bda15g00548 . Bpe13g00246 Bma06g00214 . Cmo13g00905 Cmo18g00140 Cma10g00116 Cma11g00085 . . Sed08g0099 . . Bhi02g00481 Tan09g2278 Cmetu02g0831 . Hepe09g0215 . . Cla06g01676 Cam06g1864 Cec06g1913 Cco06g1918 Clacu06g1819 Cmu06g1761 Cre06g2578 Cone2ag0921 Cone16ag0086 Cone13ag0154 Cone19ag0153 Lsi02g00392 Csa01g00870 Chy12g01252 Cme12g01676 . . Bda11g01659 Bda14g00803 . Bpe15g00645 . Bma08g00090 Sed08g2526 Cmo10g00121 Cmo11g00086 Cma13g00872 Cma18g00182 Car13g00714 . . . Bhi08g01642 Tan05g1987 Cmetu12g0625 . Hepe07g2212 . . Cla01g01316 Cam01g1414 Cec01g1445 Cco01g1478 Clacu01g1381 Cmu01g1291 Cre01g1250 Lsi06g01565 Csa01g00133 Chy02g02594 Cme02g01990
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001583 3 3 3 3 3 2 1 2 2 2 2 2 4 2 2 4 2 4 0 2 2 3 2 2 2 1 2 6 2 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00392 Lsi_Chr02 FPKM 3.908982 3.859184 15.333846 15.008561 7.4488 5.569583 6.032049 27.128527 28.5683 26.198452
Lsi02g00392 Lsi_Chr00 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0