Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00396 ATGGCAGCAAGGGACATGAAGAAGGCAGCAAAAGTGAAAGAGAGGATCAAAAGAGAAAGTCCAGAGGCAGAAATTTTAGTGTCAGAGATAGACCTGAGCTCTCTTGCTTCTGTTAGGAGGTTCTGTGTGGAGTTTGCAGCTTTAGGGCTACCACTCAACATTCTCATAAACAATGGTGGGGTTTTCTCTCCAAATTTGGAGTATTCTGATGACAAATTTGAATTGACATTTGCTACTAATTATTTGGCTCCTCCATGTAAAATTATATCAACTCTGGAAACTCCTTTAACAAAATACAATGGCACGCGTGCTTATGCTCAGTCAAAACTGGCTTGCATTTTACATGCCAAGGAGGTGGCTAGACAGTTGAAGGTTATCTTCCTTCTTCACCTTCTACATTTCCTGCAAAGAGTTAACAAAACAGCCCAAATTCTGAAATTCCAGCCATGTTTACAGGAAAGAGATGCGAATGTGACAATTAATGCAGTGCATCCAGGAATTATAAAGACTGCAATTATCAGAGCACATCGAGGATTTATCACAGGCAGGAACTGTTGA 558 40.5 MAARDMKKAAKVKERIKRESPEAEILVSEIDLSSLASVRRFCVEFAALGLPLNILINNGGVFSPNLEYSDDKFELTFATNYLAPPCKIISTLETPLTKYNGTRAYAQSKLACILHAKEVARQLKVIFLLHLLHFLQRVNKTAQILKFQPCLQERDANVTINAVHPGIIKTAIIRAHRGFITGRNC 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3360875 3362696 - Lsi02G003960.1 Lsi02g00396 655138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00396 185 Pfam short chain dehydrogenase 3 83 IPR002347 -
Lsi02g00396 185 Gene3D - 1 86 - -
Lsi02g00396 185 Gene3D - 87 183 - -
Lsi02g00396 185 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 150 181 - -
Lsi02g00396 185 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 1 83 - -
Lsi02g00396 185 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 178 IPR036291 -
Lsi02g00396 185 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 90 124 - -
Lsi02g00396 185 PRINTS Glucose/ribitol dehydrogenase family signature 50 61 IPR002347 -
Lsi02g00396 185 PRINTS Glucose/ribitol dehydrogenase family signature 156 173 IPR002347 -
Lsi02g00396 185 PANTHER RETINOL DEHYDROGENASE 150 181 - -
Lsi02g00396 185 PANTHER RETINOL DEHYDROGENASE 90 124 - -
Lsi02g00396 185 PANTHER RETINOL DEHYDROGENASE 1 83 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00396 - - - thj:104809250 183.726
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00396 Lsi06g01573 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00396 Lsi-Chr2:3360875 Lsi09g00092 Lsi-Chr9:816008 3.30E-18 dispersed
Lsi02g00396 Lsi-Chr2:3360875 Lsi06g01573 Lsi-Chr6:26144841 1.97E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g794 Blo04g00726 . . . Bpe12g00629 Bpe13g00248 Bma06g00212 . Cmo13g00903 . Cma10g00111 . Car10g00100 . . Cpe20g00254 . . . . . . . . Cla06g01682 Cam06g1869 Cec06g1918 Cco06g1923 Clacu06g1824 Cmu06g1767 Cre06g2583 Cone2ag0923 Cone16ag0084 Cone13ag0157 Cone19ag0156 Lsi02g00396 . . . Blo13g00099 . Bda11g01661 Bda14g00802 . Bpe15g00646 Bma03g00776 . . Cmo10g00115 . Cma13g00871 . Car13g00713 . . Cpe18g00854 Bhi08g01646 . . Lac10g0476 . . . Cla01g01319 Cam01g1411 Cec01g1442 Cco01g1481 Clacu01g1384 Cmu01g1293 Cre01g1248 Lsi06g01573 Csa01g00128 Chy02g02599 Cme02g01995
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002718 2 2 2 2 2 2 2 2 2 1 2 2 2 1 1 2 2 4 2 2 1 1 2 2 2 2 2 3 2 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00396 Lsi_Chr02 FPKM 8.609058 10.132128 13.631402 14.529862 8.076475 8.14578 7.205173 23.096533 24.075108 25.097456