Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00402 ATGGGAAAGGAGGATCATATTCATATGAGGACAGCTTGCAAATTCCTTAGAAGAAAATGCTTAGCAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTAGCGAAGCTCTTGAACGACGTTCTTCCTCATCAACGACAAGACGCCGTCGTTTCGCTCGCCTACGAAGCAGAGGCAAGAATCAGAGATCCTGTTTATGGTTGTGTTGGAGCAATTTCTTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTTTCAACTCCCTTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATAATAATAATAATAATAATAATAATAATAATGATATTACTAATTCTTCTATGTATTTTAATGGTGGAACTTGA 492 39.02 MGKEDHIHMRTACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCTDFSTPFLPPHPQIITTPHPLIWNNNNNNNNNNNNNDITNSSMYFNGGT 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3394358 3397645 - Lsi02G004020.1 Lsi02g00402 655144

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00402 163 Coils Coil 88 108 - -
Lsi02g00402 163 MobiDBLite consensus disorder prediction 142 163 - -
Lsi02g00402 163 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 11 146 - -
Lsi02g00402 163 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Lsi02g00402 163 Pfam Lateral organ boundaries (LOB) domain 12 106 IPR004883 -
Lsi02g00402 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 146 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00402 - - - gmx:100799774 196.823
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Lsi02g00402 Lsi06g01582 CCT
Lsi02g00402 Lsi06g01582 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00402 Lsi-Chr2:3394358 Lsi11g00839 Lsi-Chr11:10483445 4.87E-49 dispersed
Lsi02g00402 Lsi-Chr2:3394358 Lsi03g01359 Lsi-Chr3:24507575 3.40E-58 wgd
Lsi02g00402 Lsi-Chr2:3394358 Lsi06g01582 Lsi-Chr6:26226856 5.67E-62 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g801 . . . Bda15g00546 Bpe12g00665 Bpe13g00250 Bma06g00210 Bma12g01049 Cmo13g00898 Cmo18g00146 Cma10g00105 Cma11g00077 Car10g00093 Car11g00069 Sed08g0088 Cpe20g00259 Cpe04g01574 Bhi02g00500 Tan09g2289 Cmetu02g1623 . Hepe09g0225 . . Cla06g01688 Cam06g1875 Cec06g1923 Cco06g1928 Clacu06g1830 Cmu06g1772 Cre06g2588 . Cone16ag0081 Cone13ag0160 Cone19ag0159 Lsi02g00402 Csa01g00875 Chy12g01247 Cme12g01670 Blo13g00135 Blo15g00256 Bda11g01663 . Bpe07g00855 . . Bma08g00088 Sed08g2530 Cmo10g00109 Cmo11g00077 Cma13g00866 Cma18g00185 Car13g00709 Car18g00177 Cpe09g01010 Cpe18g00859 Bhi08g01650 Tan05g1980 Cmetu12g0285 Lac10g0481 Hepe07g2205 . . Cla01g01323 Cam01g1406 Cec01g1438 . Clacu01g1388 Cmu01g1297 Cre01g1243 Lsi06g01582 Csa01g00123 Chy02g02604 Cme02g02002
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lsi11g00839 . 8 225 AS2 family AT1G65620 66.4 3.8e-69 258.1
Lsi10g00645 . 2 110 AS2 family AT1G65620 81.7 8.3e-48 187.2
Lsi06g01582 CCT,ECH 22 205 AS2 family AT1G65620 53.8 2.4e-47 185.7
Lsi03g01359 . 3 125 AS2 family AT1G65620 65.9 2.8e-43 172.2
Lsi02g00402 CCT,ECH 12 112 AS2 family AT1G65620 71.3 6.6e-37 151.0
Lsi10g00645 . 1 122 AS2 family AT5G66870 86.9 1.4e-57 220.3
Lsi11g00839 . 11 119 AS2 family AT5G66870 77.1 6.7e-44 174.9
Lsi06g01582 CCT,ECH 20 132 AS2 family AT5G66870 68.1 2.2e-39 159.8
Lsi03g01359 . 7 113 AS2 family AT5G66870 68.2 4.9e-39 158.7
Lsi02g00402 CCT,ECH 12 125 AS2 family AT5G66870 64.0 1.0e-36 151.0
Lsi10g01458 . 1 122 AS2 family AT5G66870 56.6 1.3e-36 150.6
Lsi10g00645 . 4 118 AS2 family AT2G23660 69.6 3.0e-44 176.0
Lsi11g00839 . 13 119 AS2 family AT2G23660 69.2 5.8e-40 161.8
Lsi06g01582 CCT,ECH 27 132 AS2 family AT2G23660 64.2 1.9e-38 156.8
Lsi03g01359 . 7 113 AS2 family AT2G23660 61.7 6.0e-37 151.8
Lsi03g01359 . 4 114 AS2 family AT3G27650 83.8 7.5e-52 200.3
Lsi06g01582 CCT,ECH 7 133 AS2 family AT3G27650 72.4 3.9e-48 188.0
Lsi11g00839 . 10 119 AS2 family AT3G27650 69.1 1.9e-42 169.1
Lsi02g00402 CCT,ECH 12 113 AS2 family AT3G27650 73.5 3.9e-40 161.4
Lsi10g00645 . 4 112 AS2 family AT3G27650 67.9 3.9e-40 161.4
Lsi06g01582 CCT,ECH 22 132 AS2 family AT5G63090 93.7 4.1e-57 218.0
Lsi03g01359 . 2 125 AS2 family AT5G63090 77.4 1.2e-51 199.9
Lsi02g00402 CCT,ECH 12 112 AS2 family AT5G63090 82.2 2.1e-45 179.1
Lsi11g00839 . 10 129 AS2 family AT5G63090 70.0 1.4e-44 176.4
Lsi10g00645 . 2 110 AS2 family AT5G63090 70.6 1.2e-40 163.3
Lsi02g01015 . 15 126 AS2 family AT5G63090 64.3 3.3e-38 155.2
Lsi04g01066 . 4 106 AS2 family AT5G63090 69.9 1.2e-37 153.3
Lsi04g01066 . 3 135 AS2 family AT2G30130 79.7 2.0e-54 209.1
Lsi10g01458 . 2 133 AS2 family AT2G30130 72.0 1.9e-49 192.6
Lsi02g01015 . 10 130 AS2 family AT2G30130 68.6 1.3e-45 179.9
Lsi10g01525 . 10 116 AS2 family AT2G30130 65.5 2.6e-38 155.6
Lsi04g01033 . 39 150 AS2 family AT2G30130 67.0 9.8e-38 153.7
Lsi06g01582 CCT,ECH 27 130 AS2 family AT2G30130 68.3 1.3e-37 153.3
Lsi11g01618 . 11 163 AS2 family AT2G30130 52.3 2.9e-37 152.1
Lsi11g00839 . 14 116 AS2 family AT2G30130 67.0 6.4e-37 151.0
Lsi02g01015 . 4 171 AS2 family AT1G31320 74.7 1.5e-66 249.2
Lsi10g01525 . 1 162 AS2 family AT1G31320 67.6 6.0e-55 210.7
Lsi04g01066 . 2 162 AS2 family AT1G31320 56.4 2.5e-45 178.7
Lsi10g01458 . 6 122 AS2 family AT1G31320 64.1 4.2e-40 161.4
Lsi11g01618 . 9 168 AS2 family AT1G31320 53.1 5.5e-40 161.0
Lsi04g01033 . 48 160 AS2 family AT1G31320 62.8 1.1e-37 153.3
Lsi06g01582 CCT,ECH 28 139 AS2 family AT1G31320 62.5 7.4e-37 150.6
Lsi02g01442 . 34 210 AS2 family AT2G28500 55.0 1.8e-46 183.0
Lsi02g01441 . 14 129 AS2 family AT2G28500 69.8 6.5e-44 174.5
Lsi04g00812 . 56 147 AS2 family AT2G28500 88.0 3.5e-42 168.7
Lsi02g01697 . 12 105 AS2 family AT2G28500 75.5 4.8e-39 158.3
Lsi04g01066 . 5 113 AS2 family AT2G28500 65.1 1.3e-36 150.2
Lsi04g00812 . 56 210 AS2 family AT1G07900 68.8 6.9e-44 174.1
Lsi10g01295 . 31 220 AS2 family AT1G07900 58.2 6.5e-42 167.5
Lsi02g01442 . 21 210 AS2 family AT1G07900 53.6 1.1e-41 166.8
Lsi02g01441 . 14 129 AS2 family AT1G07900 66.4 1.2e-40 163.3
Lsi02g01697 . 6 104 AS2 family AT1G07900 73.7 6.1e-40 161.0
Lsi02g01015 . 11 171 AS2 family AT1G16530 53.7 6.2e-41 164.1
Lsi10g01525 . 6 162 AS2 family AT1G16530 51.8 4.0e-40 161.4
Lsi04g01066 . 5 110 AS2 family AT1G16530 67.3 4.2e-37 151.4
Lsi04g01033 . 1 157 AS2 family AT2G30340 69.6 2.4e-58 222.6
Lsi03g00275 . 9 153 AS2 family AT2G30340 72.3 4.2e-55 211.8
Lsi04g01033 . 32 157 AS2 family AT2G40470 88.1 9.4e-60 226.9
Lsi03g00275 . 33 152 AS2 family AT2G40470 84.2 4.1e-55 211.5
Lsi02g01015 . 16 126 AS2 family AT2G40470 64.0 3.5e-38 155.2
Lsi03g00297 . 3 153 AS2 family AT3G11090 60.0 8.7e-43 170.2
Lsi05g01004 . 1 117 AS2 family AT2G42440 72.6 6.8e-44 174.5
Lsi02g02174 . 14 148 AS2 family AT2G42440 64.0 2.9e-42 169.1
Lsi05g01004 . 4 117 AS2 family AT3G58190 78.9 5.9e-47 184.5
Lsi02g02174 . 14 128 AS2 family AT3G58190 76.1 6.5e-46 181.0
Lsi05g01003 . 23 118 AS2 family AT3G58190 74.0 1.2e-39 160.2
Lsi03g01564 . 27 153 AS2 family AT3G58190 59.1 1.4e-37 153.3
Lsi04g00900 . 13 121 AS2 family AT3G58190 67.9 3.2e-37 152.1
Lsi05g01004 . 1 171 AS2 family AT2G31310 51.1 2.3e-39 159.1
Lsi05g01003 . 23 228 AS2 family AT2G42430 54.1 4.0e-52 201.8
Lsi05g01004 . 3 94 AS2 family AT2G42430 80.4 6.6e-39 157.9
Lsi03g01564 . 34 174 AS2 family AT2G42430 56.7 1.1e-38 157.1
Lsi09g01901 . 29 118 AS2 family AT2G42430 80.0 4.3e-38 155.2
Lsi02g02174 . 14 116 AS2 family AT2G42430 70.9 1.4e-36 150.2
Lsi09g01901 . 29 115 AS2 family AT4G00220 87.4 5.0e-41 164.9
Lsi09g01900 . 31 214 AS2 family AT4G00220 50.8 4.7e-39 158.3
Lsi09g01901 . 29 300 AS2 family AT2G45420 54.1 4.5e-62 235.0
Lsi03g01564 . 35 141 AS2 family AT2G45420 74.8 1.2e-41 167.2
Lsi02g02174 . 14 120 AS2 family AT2G45420 69.2 1.3e-40 163.7
Lsi05g01003 . 24 119 AS2 family AT2G45420 78.1 1.7e-40 163.3
Lsi09g01900 . 31 158 AS2 family AT2G45420 57.5 2.1e-38 156.4
Lsi05g01004 . 7 95 AS2 family AT2G45420 76.4 1.1e-36 150.6
Lsi03g01564 . 35 148 AS2 family AT3G03760 86.8 2.4e-50 196.1
Lsi02g02174 . 14 118 AS2 family AT4G00210 66.7 2.9e-38 155.6
Lsi03g01564 . 28 136 AS2 family AT4G00210 69.7 8.6e-38 154.1
Lsi09g01901 . 29 115 AS2 family AT2G45410 79.3 3.0e-39 158.7
Lsi03g01564 . 35 136 AS2 family AT2G45410 68.6 6.3e-37 151.0
Lsi05g01003 . 24 119 AS2 family AT2G45410 69.8 6.3e-37 151.0
Lsi04g00900 . 14 144 AS2 family AT5G06080 65.4 2.2e-44 175.6
Lsi02g02933 . 29 137 AS2 family AT3G13850 76.1 1.7e-43 173.3
Lsi05g00382 . 1 162 AS2 family AT1G68510 65.3 9.3e-59 223.8
Lsi06g01333 . 1 159 AS2 family AT1G68510 61.8 1.8e-54 209.5
Lsi04g00252 . 1 136 AS2 family AT1G68510 65.5 5.1e-49 191.4
Lsi01g00909 . 1 104 AS2 family AT1G68510 64.4 7.4e-40 161.0
Lsi04g01494 . 1 126 AS2 family AT1G68510 57.9 1.5e-37 153.3
Lsi05g00382 . 1 302 AS2 family AT1G67100 50.2 2.1e-71 265.8
Lsi06g01333 . 1 140 AS2 family AT1G67100 73.2 7.6e-61 230.7
Lsi04g00252 . 1 132 AS2 family AT1G67100 69.3 2.9e-52 202.2
Lsi01g00909 . 1 110 AS2 family AT1G67100 67.3 1.7e-44 176.4
Lsi04g01494 . 1 110 AS2 family AT1G67100 63.6 2.2e-39 159.5
Lsi05g00382 . 1 302 AS2 family AT3G02550 55.6 1.4e-79 293.1
Lsi06g01333 . 1 160 AS2 family AT3G02550 68.9 7.8e-62 234.2
Lsi04g00252 . 1 141 AS2 family AT3G02550 64.1 8.4e-48 187.6
Lsi01g00909 . 1 136 AS2 family AT3G02550 55.1 4.9e-40 161.8
Lsi04g01494 . 1 110 AS2 family AT3G02550 63.6 1.1e-36 150.6
Lsi01g00909 . 1 236 AS2 family AT5G67420 58.9 1.5e-70 263.1
Lsi04g01494 . 1 127 AS2 family AT5G67420 65.9 1.0e-47 187.2
Lsi05g00382 . 3 122 AS2 family AT5G67420 65.8 2.8e-45 179.1
Lsi06g01333 . 3 112 AS2 family AT5G67420 61.8 2.1e-40 162.9
Lsi04g00252 . 3 113 AS2 family AT5G67420 61.6 1.5e-38 156.8
Lsi01g00909 . 1 235 AS2 family AT3G49940 59.9 1.5e-70 263.1
Lsi04g01494 . 1 127 AS2 family AT3G49940 70.2 7.1e-49 191.0
Lsi05g00382 . 3 157 AS2 family AT3G49940 52.8 6.2e-45 177.9
Lsi06g01333 . 3 112 AS2 family AT3G49940 62.7 1.6e-40 163.3
Lsi04g00252 . 3 113 AS2 family AT3G49940 63.4 4.3e-38 155.2
Lsi01g00909 . 1 236 AS2 family AT4G37540 55.9 1.9e-67 252.7
Lsi04g01494 . 1 203 AS2 family AT4G37540 50.4 3.9e-52 201.8
Lsi05g00382 . 3 113 AS2 family AT4G37540 65.8 8.2e-42 167.5
Lsi06g01333 . 3 113 AS2 family AT4G37540 63.1 4.5e-40 161.8
Lsi04g00252 . 3 126 AS2 family AT4G37540 57.3 9.3e-38 154.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013013 0 1 0 0 0 1 2 0 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24756 PF03195 LOB 1.80E-39 No_clan Lsi TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00402 Lsi_Chr02 FPKM 1.053406 1.074678 0.747617 1.410471 0.72196 0.858762 1.446759 0.794648 1.331008 1.423093