Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00402 ATGGGAAAGGAGGATCATATTCATATGAGGACAGCTTGCAAATTCCTTAGAAGAAAATGCTTAGCAGGATGTGTTTTTGCACCCTATTTTCCACCTGAAGAACCCCAAAAATTTGCCAATGTCCACAAGGTATTCGGAGCGAGTAACGTAGCGAAGCTCTTGAACGACGTTCTTCCTCATCAACGACAAGACGCCGTCGTTTCGCTCGCCTACGAAGCAGAGGCAAGAATCAGAGATCCTGTTTATGGTTGTGTTGGAGCAATTTCTTTCCTTCAAAAACAGGTCCAAAGGCTCCAAAAAGAACTTGATGCTGCTAAAGCTCGCCTTTTTCTCTACTCTTGCACTGATTTTTCAACTCCCTTTTTGCCTCCTCACCCTCAGATTATTACTACTCCTCATCCACTGATTTGGAATAATAATAATAATAATAATAATAATAATAATAATAATGATATTACTAATTCTTCTATGTATTTTAATGGTGGAACTTGA 492 39.02 MGKEDHIHMRTACKFLRRKCLAGCVFAPYFPPEEPQKFANVHKVFGASNVAKLLNDVLPHQRQDAVVSLAYEAEARIRDPVYGCVGAISFLQKQVQRLQKELDAAKARLFLYSCTDFSTPFLPPHPQIITTPHPLIWNNNNNNNNNNNNNDITNSSMYFNGGT 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3394358 3397645 - Lsi02G004020.1 Lsi02g00402 655144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00402 163 Coils Coil 88 108 - -
Lsi02g00402 163 MobiDBLite consensus disorder prediction 142 163 - -
Lsi02g00402 163 PANTHER PROTEIN LATERAL ORGAN BOUNDARIES 11 146 - -
Lsi02g00402 163 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Lsi02g00402 163 Pfam Lateral organ boundaries (LOB) domain 12 106 IPR004883 -
Lsi02g00402 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 146 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Lsi02g00402 Lsi06g01582 CCT
Lsi02g00402 Lsi06g01582 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00402 Lsi-Chr2:3394358 Lsi11g00839 Lsi-Chr11:10483445 4.87E-49 dispersed
Lsi02g00402 Lsi-Chr2:3394358 Lsi03g01359 Lsi-Chr3:24507575 3.40E-58 wgd
Lsi02g00402 Lsi-Chr2:3394358 Lsi06g01582 Lsi-Chr6:26226856 5.67E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24756 PF03195 LOB 1.80E-39 No_clan Lsi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00402 - - gmx:100799774 196.823