Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00412 ATGAGGTTGTATGTTTATGTATTGGAGGCCAAGGACCTCCATGTGAACGACTCGTTTGTGAAGCTTCGAGTTGGGAGGCGTAAGGCCAAGACGAGGATTATAAGAAATAGCCCTAATCCTGTTTGGAATGAGGAGTTCATTTTCAAGTTTCGTGATGTTGATGATGAACTAGTTGTGTCTGTTTACGAACACAGTGATGAATCCAACTTCTTCCATGCCTCATCGGGTTTGATTGGTCGGGTTCGAATACCCATATGGACCGTTGCTGCTGAGGATTCACAGACCTTGCCGCCGACTTGGTTTGATCTACGAAGGTCCAAAACCGAGAAATTCATCAATGAAGTAACCGGTTGGTTTTCTATGTTTCTTCTACTTCCATCGTTGATTATGTATTTTCTGCCTTTTTCTCAGTTTGCATCACTTGAACTCAATTGCCTTGTCCTTTACTTCATTGTATGTGAATGCATGATGTTTGAAGATGAAATGAACTATATTGAGTTTGATCTCGTTGGCTATATTTATGCAGGGAAAGTGCTTCTTATTGTCTCATTACATGGAAAAGGCAATGCACTCAATCAATCAAGTGTTACTAATACTAATCCTAAACCACTGGAAGACTCATCTACAACTCCACAGGATTTGATTGGCGCCAAATCTTCATCCAGCAAGGCTTTCAAATGGAAGCCTAACAAGAAGACTATTGTGAGTCGTTTGGAGAGGTTGTTCCATAAGAGTGATGAAGATACAAGAACAGATAATTCTTCAGAGTCATCAAGTGCCATGTCTGATACTGAAGAGCTCACAAATGGGCATCCCTCTGAATCTAATTTTGATGAAGCTATTGAGGCATTGCAGTCGAGGAGCAATGAACAGGAAATGCCTGACAATCTATCCGGTGGTGTTCTTGTCGATCAGGTGTATGTAGTTTCACCGGGTGATTTGAACAAGCTTCTCTTTTCTCCAGATTCACAGTTCAGGAGAGAGCTAGCAGAACATCAGGGAATAACAAATTTAGAAGAAGGAACTTGGTCTTGGAAACAAGGGGATGTACCTTGTCTATCACGGATTGTATCTTACAGGAAACCCCCAACTAAGGTTGTTGGAGCTATTAATGCTACGGAGGAGCAAACCTACATTAAAGGGGATGGATGGGAATTTGCTGTCTTGGTAAATGTAAGTACACCTGAGGTTCCATTTGGTAATGCATTCAATGTTGAGTTACTTTACAAGATAATGTCTGGCCCTGACCTAATTTCTGGAGAAGAGACTTCCCATTTTGTAGTTTCTTGGGGTATAAACTTCCTCCATAGTACAATTATGAAAGGCATGATTGAGAAAGGGGCTCGACAGGGACTGGAGGAAAATTTTGTCCAGTTCACTAACTTGCTGGCCCAACATCTTAAAATTCCAAATTCTCCTGAGTTATTGAACAAGGATCATGTGTTGTCAACTTCTGAGAATGACCGCCATTCAGATTTTGAATTGGCCAGCCAATACTTCTGGAACTTCACTGTCTTTTCTACCATGTTCGTCCTGCTATACGTTCTTGTGCACATCATTCTTTCTAAGCCCAAAAGAAAGCAAGGCTTGGAGTTCACTGGAATGGATTTGCCAGATAGTTTAGGAGAACTTGTTACTAGTGGAATTTTAGTCCTTCAGTTGGAACGTGTTTATAACATGGTCTCACATTTCATTCAAGCTAGGTTAAAAAGAGGAGGTGACCATGGGATCAAAGGCCAAGGAGACGGATGGATCCTAACCATAGCTCTTATAGAAGGAGTGAACATTTCATCCTTGGATTCTTCTGGATCCTCAGACCCTTGTGTGGTTTTCACATGCAATGGTAAAAAAAGAACTAGCTCAGTTGAGCTTCAAACTCATGAGCCTCAATGGAATGAGGTACTCGAGTTTGATGCCATGAAGGAACCACCATCAGTATTATATGTGGAGGTTTTTGACTTTGATGGTCCATTTGACCAGGCTACTTCGCTTGGGCATGCGGAGATTAATTTCCTAAAATATAAATCAACCGAACTTGCAGATATATGGGTTCCCCTTGAGGGGAAGCTTGCTCAGTCTACTCAGTCGAAGCTACACTTGAGAATCTTCTTAGATAATACCGATGGAGTTGAAACAATAAAACAGTACTTGTCTATGAAGGGAAAGGAGGTTGGGAAGAAGTTGCATCCCAGGTCACCTTACAGGAATTCAACATTTCAAAAACTTTTTGGTTTGCCATCAGAAGAGTTTCTTGTCAGCGACTTCACATGCTCCTTGAAAAGAAAAATGCTTCTCCAGAAAACAAAATTTTTCTTTCTCTGGGAGGACATTGAAGATATACAAGTACTCCACCCCTCCCTTTCCTCTCTGGGTAGCCCATCATTAGTCATAATTCTTAAAAAAGATCGAGGTCTTGAAGCAAGTCATGGTGCAAAGTCTCAAGATGAACAGGGCAGGCTCAGATTTTACCTCCAATCATTTGTCTCATTCAATGTAGCCAGCAGGACGATTATTGGTATGTGGAGAACAAGGACATCGACCCTAGATCAAAAGGCACAAGTTGCTGAAACATCAAATGATTCCGAAGAAAGGTCAGTTTTGGTGGAGGATGTGGAATGTTTTTTGGATGTAGAAGATACAAAGATGTCAAAGTTGTATGTTGCAGAACTTCCTCTAAATGTAAAATTATTGATGGAGTTTTTTGAGGGTGGCAAGTTAGAGCATAGGGTGATGGAAAAATCTGGTTGTCTAAACTACACGACGACGCCTTGGGAATTCGTGAAACCCGATATCCTCGAAAGACACATTTCTTACCAATTCAATCACGACATATCGATGTTTGAAGGTAAAGTCACATGCATTCAGCAAAAAATCCCCATGGCAGCAGCAGACACAGGCAGAGATGAAGAAGAATGGGTACTAAACGAGGTCATGAGCTTGCAGGATGTCCCATTTGGTGACTGTTTTCGTATTCATTTTAGGTACTGTTTTGAGGATTCTGAGCTAGCTAAAAATGCTTGCAAATGCAAGGCTTTCTATGGAATCACTTGGCTTAAAAGCACTGAGCTTCAGCAGAAGATCACCCAGAACATAGCTGACGATTCGCATCTTCTTCTCTACCCCTCTCCGACGCTCATTCTGTTGGGATTTTCTGAAGCCATGGAGTCTACTATGGTGATTAAGGTTAGGTATGGAGAAATGCTAAGGCGCTTCACTGTTAGAGTCCATGAAAACAGTAGACTGGGTCTTGACATCAAGGGGTTGAGAGCAAAAATACGTGATCTCTTCAACTTCTCTTCTGATGCTGATTTTACATTGACTTACATTGATGAAGATGGCGATGTTGTGACCCTGGTCAATGATGATGATCTGCATGAACTGATGAGGCAACAGTTGAAGTTCTTGAGAATTGATGTGCATATGAGAAATAAGGAAAATAACAGATCTCGTGATAGATCAGATGGAAGTTCTACTCCTATGACATCTGAACGTTCATTTCAAAATGTTTGTACTGGTATCTCTGACGTTTTGAAATCTATGCCAGAGCCCTTACCTGAATTTTGTTCACAGCTCCTCCTTGACATTGCTTCAAAAGCTGTTACTAGCCCTGTACTTTCTGAGCTTGCTCAAAGCTTTATTCGGTTGGGAAACACACACCCGCACACAGGTTCTCAGGCCTCATCTGTTCCAGAGACAAGCACACAGAATGTGGCCACTGACTGTACACCTCCTCTAGGTGCAGATTCAAAAGCTTCAAAGAATGATGTTCATCAAGAAGCTGGGTCAAAAATTCAATGCACTGGTTCTTCTTATAAAGATAGAAATATAACTAACAGTGAGAGTGTGACAAAGAACATTGGTGTATCTGCACCTGTTTTTGATCTTGATGCCCTTCCTGGGAAGTCAGCTTTTGCTGCCCGTTGCTGCAGCTCTTTTGATGGAAAGAAGAAGGAAAAACGCAATGATGCATTTCTTGACCCCTTCCAAGAAATCCTTGTAAGAAATCTTCCAGCATCGATGCTCGATAACTCACATAATTCACCTGCCACTTATATGGATGGTAGGTTTGTTAATGAGTGCCCTTTTAGTGGAGTACCTGTGGCTCCTCGACCGTCTATGCTTGGAACTGTAGGCATAGATCCAGTAAGTAGCAGCAGTGGTTACACTGAATCTGCGGGAAGTATGTTCCATAAAGGTCCAATAGTTAACAGTGGCTACATTGAAGCATTCCATGAAGATCCAATAATTAGCAGCAGAGGTGATGTTGGATCTGTGGGAAGTATGTTCCATAAAGGTGTTATTTGTGATGGCTGTGGAGCCCGTCCAATTACTGGTCCGCGGTTCAAGTCCCAAGTGAAAGATAATTATGATCTCTGTAGCATCTGCTTTGTTAAAATGGGCAATGAGGCTGACTACATTAGGATTGATCGTCCTCTCTCTTGCCGGCATCCAAGAATGAAAGCATTCAACCGTAGATATCCATTTCCGGGCCCCCAAATAATGGATGCTTTTAGAGGTCCTGTAAATCAGACCAAGCTTGATAGTAGCTTTGTAGCTGACGTTAATGTCTTTGATGGCACTGTGATGGCTCCAAGTATCCCATTTACCAAGATATGGCGATTGCGTAATAGTGGGACTTTGAATTGGCCCCGTGGTACACAGCTAGTGTGGATGGGGGGAGACAAGTTGGGCCGTTCAGGATCGGTTGAAATAGAGGTTCCTGCTGATGGACTTCCTCTGGGTCAGGAGATTGAAATTGCAGTGGACTTTACTACCCCTCCATTTTCTGGTCAATACACCTCATACTGGATGATGGCATCTCCATCTGGCCAGAGATTTGGGCAACGTGTTTGGGTTCTTATTCAGGTTGATGAAGCACTTGGGATGCTGGATTCCAAATATTCCCAAGCTTTGGACTTAAATTTACCCCCCATACTCATAGGTCGTGCCCATGAAGGTGTAGATAAGAATTCGACTCCTGCAATTTCTGATGGTGTCCTTTTCCCTCCTCGCGATTCCATCCCCATCGTTGAACTGGTAAAACCTGAACATAATCTGTCTGCAACTGATCCGGATTTGCAACTCTTCGTAGATCAGGATATTCTAGTTGGCGAAAGCCCTGCTACTTTTGCTAGGGAGGATAACTTGGGCTCGTCTAGCTCTGCTGTTGATCGTCATGGAGTTCTACCTTGTTCAACCAAGGTTCCCCCCCCTGAGTCATATTCTCCTTTTGATTTTCCTGTACCAATTCCACCTGCAAACCCACCTCCAACACCATCCCCCAAGGTTTCTCCAGCATCATCTGTAAATGTCAATGCCAATAATGCCAATAACATTGTTGAAGAAACTCTTCTTAAAACACTCGAGGATATGGGATTCAAACAGTTTGATCTAAACAAGGAAGTACTGAAGAGGAACGAGTACGATCTAGAGCAGTCGGTGGATGAACTCTGCGGAGTTACTGAATGGGATCCAATGCTTGATGAGTTGGATGAAATGGGATTCAGTAACAAGGAAATGAACAAAAAACTTCTGATGAAGAACAATGGCAGCATGAAGCAAGTAGTGATGGAACTTCTTTATGGGGAGAAGGCTTAG 5598 42.43 MRLYVYVLEAKDLHVNDSFVKLRVGRRKAKTRIIRNSPNPVWNEEFIFKFRDVDDELVVSVYEHSDESNFFHASSGLIGRVRIPIWTVAAEDSQTLPPTWFDLRRSKTEKFINEVTGWFSMFLLLPSLIMYFLPFSQFASLELNCLVLYFIVCECMMFEDEMNYIEFDLVGYIYAGKVLLIVSLHGKGNALNQSSVTNTNPKPLEDSSTTPQDLIGAKSSSSKAFKWKPNKKTIVSRLERLFHKSDEDTRTDNSSESSSAMSDTEELTNGHPSESNFDEAIEALQSRSNEQEMPDNLSGGVLVDQVYVVSPGDLNKLLFSPDSQFRRELAEHQGITNLEEGTWSWKQGDVPCLSRIVSYRKPPTKVVGAINATEEQTYIKGDGWEFAVLVNVSTPEVPFGNAFNVELLYKIMSGPDLISGEETSHFVVSWGINFLHSTIMKGMIEKGARQGLEENFVQFTNLLAQHLKIPNSPELLNKDHVLSTSENDRHSDFELASQYFWNFTVFSTMFVLLYVLVHIILSKPKRKQGLEFTGMDLPDSLGELVTSGILVLQLERVYNMVSHFIQARLKRGGDHGIKGQGDGWILTIALIEGVNISSLDSSGSSDPCVVFTCNGKKRTSSVELQTHEPQWNEVLEFDAMKEPPSVLYVEVFDFDGPFDQATSLGHAEINFLKYKSTELADIWVPLEGKLAQSTQSKLHLRIFLDNTDGVETIKQYLSMKGKEVGKKLHPRSPYRNSTFQKLFGLPSEEFLVSDFTCSLKRKMLLQKTKFFFLWEDIEDIQVLHPSLSSLGSPSLVIILKKDRGLEASHGAKSQDEQGRLRFYLQSFVSFNVASRTIIGMWRTRTSTLDQKAQVAETSNDSEERSVLVEDVECFLDVEDTKMSKLYVAELPLNVKLLMEFFEGGKLEHRVMEKSGCLNYTTTPWEFVKPDILERHISYQFNHDISMFEGKVTCIQQKIPMAAADTGRDEEEWVLNEVMSLQDVPFGDCFRIHFRYCFEDSELAKNACKCKAFYGITWLKSTELQQKITQNIADDSHLLLYPSPTLILLGFSEAMESTMVIKVRYGEMLRRFTVRVHENSRLGLDIKGLRAKIRDLFNFSSDADFTLTYIDEDGDVVTLVNDDDLHELMRQQLKFLRIDVHMRNKENNRSRDRSDGSSTPMTSERSFQNVCTGISDVLKSMPEPLPEFCSQLLLDIASKAVTSPVLSELAQSFIRLGNTHPHTGSQASSVPETSTQNVATDCTPPLGADSKASKNDVHQEAGSKIQCTGSSYKDRNITNSESVTKNIGVSAPVFDLDALPGKSAFAARCCSSFDGKKKEKRNDAFLDPFQEILVRNLPASMLDNSHNSPATYMDGRFVNECPFSGVPVAPRPSMLGTVGIDPVSSSSGYTESAGSMFHKGPIVNSGYIEAFHEDPIISSRGDVGSVGSMFHKGVICDGCGARPITGPRFKSQVKDNYDLCSICFVKMGNEADYIRIDRPLSCRHPRMKAFNRRYPFPGPQIMDAFRGPVNQTKLDSSFVADVNVFDGTVMAPSIPFTKIWRLRNSGTLNWPRGTQLVWMGGDKLGRSGSVEIEVPADGLPLGQEIEIAVDFTTPPFSGQYTSYWMMASPSGQRFGQRVWVLIQVDEALGMLDSKYSQALDLNLPPILIGRAHEGVDKNSTPAISDGVLFPPRDSIPIVELVKPEHNLSATDPDLQLFVDQDILVGESPATFAREDNLGSSSSAVDRHGVLPCSTKVPPPESYSPFDFPVPIPPANPPPTPSPKVSPASSVNVNANNANNIVEETLLKTLEDMGFKQFDLNKEVLKRNEYDLEQSVDELCGVTEWDPMLDELDEMGFSNKEMNKKLLMKNNGSMKQVVMELLYGEKA 1865
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3446359 3456445 + Lsi02G004120.1 Lsi02g00412 655154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00412 1865 Pfam VAD1 Analog of StAR-related lipid transfer domain 302 451 IPR031968 -
Lsi02g00412 1865 Pfam VAD1 Analog of StAR-related lipid transfer domain 886 1032 IPR031968 -
Lsi02g00412 1865 ProSiteProfiles VASt domain profile. 298 471 IPR031968 -
Lsi02g00412 1865 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 584 707 IPR035892 -
Lsi02g00412 1865 ProSiteProfiles PB1 domain profile. 1057 1139 IPR000270 GO:0005515
Lsi02g00412 1865 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 1 119 - -
Lsi02g00412 1865 Gene3D - 1424 1485 IPR043145 -
Lsi02g00412 1865 ProSiteProfiles C2 domain profile. 571 684 IPR000008 -
Lsi02g00412 1865 MobiDBLite consensus disorder prediction 254 275 - -
Lsi02g00412 1865 PANTHER BNAA05G37250D PROTEIN 174 1033 IPR044511 -
Lsi02g00412 1865 SUPERFAMILY UBA-like 1822 1861 IPR009060 GO:0005515
Lsi02g00412 1865 SMART PB1_new 1057 1142 IPR000270 GO:0005515
Lsi02g00412 1865 SUPERFAMILY CAD & PB1 domains 1053 1140 - -
Lsi02g00412 1865 Gene3D - 1053 1142 - -
Lsi02g00412 1865 SUPERFAMILY RING/U-box 1428 1480 - -
Lsi02g00412 1865 MobiDBLite consensus disorder prediction 192 221 - -
Lsi02g00412 1865 MobiDBLite consensus disorder prediction 1144 1165 - -
Lsi02g00412 1865 Gene3D Immunoglobulins 1508 1627 IPR013783 -
Lsi02g00412 1865 PANTHER C2 AND GRAM DOMAIN-CONTAINING PROTEIN 174 1033 - -
Lsi02g00412 1865 Gene3D C2 domain 1 116 IPR035892 -
Lsi02g00412 1865 Pfam Ig-like domain from next to BRCA1 gene 1522 1623 IPR032350 -
Lsi02g00412 1865 MobiDBLite consensus disorder prediction 1243 1264 - -
Lsi02g00412 1865 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 106 IPR035892 -
Lsi02g00412 1865 Gene3D C2 domain 575 704 IPR035892 -
Lsi02g00412 1865 Pfam C2 domain 2 103 IPR000008 -
Lsi02g00412 1865 Pfam C2 domain 584 686 IPR000008 -
Lsi02g00412 1865 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1813 1862 IPR015940 -
Lsi02g00412 1865 Gene3D - 1775 1821 - -
Lsi02g00412 1865 CDD UBA_NBR1 1822 1860 - -
Lsi02g00412 1865 Gene3D - 1822 1862 - -
Lsi02g00412 1865 SMART C2_3c 585 683 IPR000008 -
Lsi02g00412 1865 SMART C2_3c 2 97 IPR000008 -
Lsi02g00412 1865 Pfam PB1 domain 1058 1137 IPR000270 GO:0005515
Lsi02g00412 1865 CDD C2 3 103 - -
Lsi02g00412 1865 MobiDBLite consensus disorder prediction 245 275 - -
Lsi02g00412 1865 ProSiteProfiles C2 domain profile. 1 101 IPR000008 -
Lsi02g00412 1865 PANTHER BNAA05G37250D PROTEIN 1 119 IPR044511 -
Lsi02g00412 1865 Pfam Zinc finger, ZZ type 1430 1465 IPR000433 GO:0008270
Lsi02g00412 1865 SMART zz_5 1429 1474 IPR000433 GO:0008270
Lsi02g00412 1865 ProSiteProfiles Zinc finger ZZ-type profile. 1430 1480 IPR000433 GO:0008270
Lsi02g00412 1865 CDD UBA_NBR1 1780 1818 - -
Lsi02g00412 1865 CDD NBR1_like 1511 1624 IPR032350 -
Lsi02g00412 1865 CDD C2 586 686 - -
Lsi02g00412 1865 ProSiteProfiles VASt domain profile. 881 1041 IPR031968 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00412 - - - bhj:120083743 1578.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00412 Lsi-Chr2:3446359 Lsi02g01181 Lsi-Chr2:14763259 0 dispersed
Lsi02g00412 Lsi-Chr2:3446359 Lsi06g01329 Lsi-Chr6:23873869 1.91E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g818 . . . . . . . . . Cmo18g00151 . . . . . . . . . . . . . . . . . . . . . Cone2ag0931 . . . Lsi02g00412 Csa01g00881 Chy12g01241 Cme12g01664 . . . . . . . . . . . . Cma18g00190 . Car18g00182 Cpe09g01005 . Bhi08g01658 Tan05g1972 . . . . . Cla01g01329 Cam01g1399 Cec01g1431 Cco01g1492 Clacu01g1396 Cmu01g1304 Cre01g1237 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012076 0 3 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 4 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00412 Lsi_Chr02 FPKM 0.984475 0.954192 1.252447 1.501986 1.172911 1.335024 1.221623 3.106472 3.291527 3.498232