Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00417 ATGTCTCAGGATTTGTCATTGGATCAAGACCTGGATGAATCTGATCCCGAGTTCGTCGAGGTTGATCCTACTGGGCGATATGGAAGGTATAAGGAAATTTTGGGCAAAGGGGCATTCAAAAGGGTATATCGGGCTTTTGATGAGTTGGAAGGAATTGAAGTAGCTTGGAATCAGGTTAAGGTAACAGATCTATTGCGGAACTCTGAAGATTTGGAGCGACTATATTCAGAAGTTCATTTGCTTAAGACATTGAAGCACAAGAACATAATCAAATTTTACAATTCATGGGTTGATACGAAAAATGAAAACATTAACTTCATTACTGAGATATTCACTTCAGGGACACTACGACAATATAGAAAGAAACACAAGCATGTTGATTTGAGAGCATTGAAAAAGTGGTCCAGGCAGATATTAGAGGGCCTTCTGTATCTTCATAGTCATGACCCTCCAGTTATACATAGAGATTTAAAATGTGACAATATATTTGTAAATGGCAACCAAGGTGAGGTGAAAATTGGCGATTTAGGACTTGCTGCCATTCTTCAACAAGCTCGTTCAGCCCACAGTGTCATTGGGACACCCGAATTTATGGCTCCGGAGCTGTATGAGGAGGAATACAACGAGCTTGTGGATATTTATGCCTTTGGCATGTGTTTGCTTGAGCTTGTAACCTTTGAATATCCATATATTGAATGTGCAAATGCTGCTCAAATCTATAAGAAGGTCACATCAGGAATTAAACCAGCTTCATTAGCAAAAGTCACTGATTTAGGAGTGAAAGCATTTATAGAAAAATGTATTGCAAATGTCTCTGACCGTTTGCCTGCAAAAGATCTTTTAAGAGATCCATTTCTTCAAGCAGATGATGATCATGAAAGTATATCTCGTCATTTGCAATCAAAGAGGCTTCATACAGAAAAAAGAGAGCAGTTTGATTGTGATAGAAGTGTAGATGATACTTCTGCTGAGACTAGCAGAGATTTCAGTATGCATGGCCAGAGAAAAGATGTTAACAAGATATTTCTCAAACTACGAATTGCAGATTCCATGGGTAATTTTCGCAATATTCATTTCCCATTTGATATTGAAGCCGACACAGCAATTTCTGTTGCGAGTGAAATGGTTGAGGAGTTGGACCTTTCTGATCAAGATGTCTCCACAATTTCGGAAATGATTGAAACGGAAATTCGATCTTACATCCCAGATTGGATATCAGTTGAGTACTCTGCAGATAATGCAGGAGCTGATGTTGCAATATCTGATAGCTCTCCTTCTGAAACAAGGAATGTTGCCTCTCCATTGTCTATCGAGTCTGGTAATCTTGCATTAGAGGTTATGCCTTCAGGTCGCAAGTATTGGTCAGACTCTCCAAAAGGAATTGGTGGGAGTTCTCCTATTAAACCAGGTCCTTCAAACTTGTCTTTTATCTCAGATCAAAATGTTGAATCCTCTAAAACTCACATACATGGAGACAATCTAGATCATGATGCTATAATTAAAGGATTGGAAAGTGAGCTTTTGTCAGAGGGTGGTGATCATGATGGGCAGGGTGAGGGTGAAGATAGGTTAAATACAAATATTCATGCTAGCCTTGAGGCACACCTTTCAGAAGAGAACAATTATGATGAATCAATCGAACTCAAAATAATAGTTGAAAAACTTGAAAATTTGTTGACACAACAACAAAAGGAATTAGATGAACTAAAGGAAAAACATAAATTAGCTATTTCCGAACTTTTGACTAAACTTACACCTGAGTCCTATCAGAAGGTTATAGAGATGTGTCAGCAAAAGCCTGATTTTGAGTTGGTTCTCTGA 1821 38.33 MSQDLSLDQDLDESDPEFVEVDPTGRYGRYKEILGKGAFKRVYRAFDELEGIEVAWNQVKVTDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYNSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQARSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYIECANAAQIYKKVTSGIKPASLAKVTDLGVKAFIEKCIANVSDRLPAKDLLRDPFLQADDDHESISRHLQSKRLHTEKREQFDCDRSVDDTSAETSRDFSMHGQRKDVNKIFLKLRIADSMGNFRNIHFPFDIEADTAISVASEMVEELDLSDQDVSTISEMIETEIRSYIPDWISVEYSADNAGADVAISDSSPSETRNVASPLSIESGNLALEVMPSGRKYWSDSPKGIGGSSPIKPGPSNLSFISDQNVESSKTHIHGDNLDHDAIIKGLESELLSEGGDHDGQGEGEDRLNTNIHASLEAHLSEENNYDESIELKIIVEKLENLLTQQQKELDELKEKHKLAISELLTKLTPESYQKVIEMCQQKPDFELVL 606
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3474516 3479096 - Lsi02G004170.1 Lsi02g00417 655159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00417 606 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 8 603 - -
Lsi02g00417 606 Gene3D Phosphorylase Kinase; domain 1 12 109 - -
Lsi02g00417 606 Pfam Protein kinase domain 31 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00417 606 PANTHER SERINE/THREONINE-PROTEIN KINASE-RELATED 8 603 - -
Lsi02g00417 606 SUPERFAMILY Protein kinase-like (PK-like) 30 287 IPR011009 -
Lsi02g00417 606 Gene3D Transferase(Phosphotransferase) domain 1 111 294 - -
Lsi02g00417 606 Coils Coil 545 579 - -
Lsi02g00417 606 ProSiteProfiles Protein kinase domain profile. 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00417 606 CDD STKc_WNK 26 286 - -
Lsi02g00417 606 SMART serkin_6 28 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lsi02g00417 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Lsi02g00417 606 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 343 397 IPR024678 GO:0004674|GO:0005524
Lsi02g00417 606 Gene3D - 339 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00417 Lsi-Chr2:3474516 Lsi06g00807 Lsi-Chr6:16961907 3.56E-175 dispersed
Lsi02g00417 Lsi-Chr2:3474516 Lsi02g00419 Lsi-Chr2:3482300 2.05E-15 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
83350 PF00069 Pkinase 1.70E-49 CL0016 Lsi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00417 K08867 - csv:101206177 1067.76