Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00426 ATGAAAGGTAGAAGAATGAGGAAGAAGAGGAAGAGAAAAAAGAAGATCGAGGGGGCTGGAGCCAAAAGAGTGAACTTACCTCCATCACCACCAAAGCTACCAATAATTGGTAACCTTCATCAGTTGGGGAGATATCCTCATCGATCCCTTCAAGCTCTCTCTAAAAAGTATGGTTCTCTCATGTTTCTGCGACTGGGATTCACTCCAACTCTTGTGGTTTCCTCAGCAGAGATGGTCAAAGAGATATTTAAGAATCATGATATCACTTTCTCTAACAGACCCAAATCAACCGCTGCCGATTTGTTTTTCTATGGATACAAAGATGTTGGCTTTTCTCCATATGGGGAGTACTGGAGAGGATTAAAAAAGATTTGCACTCTTGAACTTCTAAGTCAGAAAAGAGTACAAGAATTTCAGTATGTGAGGGAAGAAGAAGTTGAAATCTTGGTGAATAAGGTACATAAAGCCAGATCTGCAGGTTTATCCGTTAATCTTAGTGACTTGATTACCTCAACCTCAAATAACATAGTTTCAAGATGCATATTTGGAGAGAAGTTTGAAGATGAAAATGGAAAGAGCAGATTTGGTGATCTAACAAGAAAGATGGCTAAGTTAGTTGTGGCTTTCAGTGTGGGAGATTTTTTTCCTGGTTTTGGATGGGTTGATAATATCACAGGCTTAATTGGGAAATTGAAAGAAACTTCTCGAGCACTTGATAATTTTCTTGAACAGTTGATTGGAGAACACAAGGCAAAGAAGAAAGATGATTTTCAAGATGATAAAGAAGATTTTGTGGACATTCTTCTCCATGTTCAACAGAAGGATGATCTCGGTTTTGAATTTACTCAAGAAACTGGAACGGATACGACTTCATCAGTATTGGAATGGACGATTGCAGAGCTAACAAGAAATCCAAGTATAATGAAAAAAGCACAAGAAGAAGTAAGAAAAGTGGTGGGAAAAAAGTCAAAGATAGAAGACAATGATATCCTTAGAATGGAATATCTAAAATGTGTTATCAAAGAATCACTAAGGGTCCATCCTCCTGCTCCTCTATTGTTACCTCGAGAAACATCTGAAATGGTAAAGCTGGGAGGTTACTGTATTCCATCAAAAACCAGAGTGTTTTTCAATATTTGGGCGATTCAAAAGGATCCAAAAATCTGGGAAAATCCAGAGGATTTCATCCCAGAGAGATTTATGAACAACCCAGTTGATTTCAAAGGACAAGAGTGTCATTGCCTCCCATTTGGTGCCGGGAGAAGAATCTGCCCAGGGATGAATTTTGCTTTTGCGTCAATCGAATATGTGTTGGCTAACCTTCTACAGTGGTTTGATTGGAAGCTAGCTGATGACAATATTATGGCCAAAGACATGGACATGACTGAAGATATGGGGATTGCTCTGTATATGAACTACATTATACTTGGGATTTCTTCTACTGATCGGAGCATTAGTTCGATTCCATTTTCAGCAAGCAAAAAGTTTCGGAAGATGGAGACAGTGAAGGGGTTGGAAGACGAACAATTGATAGAACAATGA 1542 38.72 MKGRRMRKKRKRKKKIEGAGAKRVNLPPSPPKLPIIGNLHQLGRYPHRSLQALSKKYGSLMFLRLGFTPTLVVSSAEMVKEIFKNHDITFSNRPKSTAADLFFYGYKDVGFSPYGEYWRGLKKICTLELLSQKRVQEFQYVREEEVEILVNKVHKARSAGLSVNLSDLITSTSNNIVSRCIFGEKFEDENGKSRFGDLTRKMAKLVVAFSVGDFFPGFGWVDNITGLIGKLKETSRALDNFLEQLIGEHKAKKKDDFQDDKEDFVDILLHVQQKDDLGFEFTQETGTDTTSSVLEWTIAELTRNPSIMKKAQEEVRKVVGKKSKIEDNDILRMEYLKCVIKESLRVHPPAPLLLPRETSEMVKLGGYCIPSKTRVFFNIWAIQKDPKIWENPEDFIPERFMNNPVDFKGQECHCLPFGAGRRICPGMNFAFASIEYVLANLLQWFDWKLADDNIMAKDMDMTEDMGIALYMNYIILGISSTDRSISSIPFSASKKFRKMETVKGLEDEQLIEQ 513
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3517047 3522579 - Lsi02G004260.1 Lsi02g00426 655168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00426 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 417 426 IPR017972 GO:0005506|GO:0016705
Lsi02g00426 513 PRINTS E-class P450 group I signature 78 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 172 190 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 424 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 54 73 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 337 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 414 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 378 402 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS E-class P450 group I signature 294 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 MobiDBLite consensus disorder prediction 1 18 - -
Lsi02g00426 513 Pfam Cytochrome P450 27 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 SUPERFAMILY Cytochrome P450 27 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 Gene3D Cytochrome P450 12 475 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 MobiDBLite consensus disorder prediction 1 27 - -
Lsi02g00426 513 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 21 470 - -
Lsi02g00426 513 PRINTS P450 superfamily signature 415 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS P450 superfamily signature 285 302 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS P450 superfamily signature 424 435 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PRINTS P450 superfamily signature 338 349 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00426 513 PANTHER CYTOCHROME P450 71B11-RELATED 21 470 - -
Lsi02g00426 513 Coils Coil 308 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00426 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101206414 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00426 Lsi-Chr2:3517047 Lsi02g00433 Lsi-Chr2:3583461 0 dispersed
Lsi02g00426 Lsi-Chr2:3517047 Lsi02g00427 Lsi-Chr2:3522958 3.16E-37 tandem
Lsi05g00743 Lsi-Chr5:10293354 Lsi02g00426 Lsi-Chr2:3517047 3.05E-58 transposed
Lsi02g00426 Lsi-Chr2:3517047 Lsi06g01591 Lsi-Chr6:26302596 7.55E-136 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g851 . . . Bda15g00535 . . . . Cmo13g00794 Cmo18g00165 . . . . . . . Bhi02g00597 . . . . . . Cla06g01705 . . . . . . . . . . Lsi02g00426 Csa01g00905 Chy12g01223 Cme12g01649 Blo13g00153 Blo15g00247 . . Bpe07g00863 . . . . Cmo10g00092 . Cma13g00766 . . . . . . . . . . . . Cla03g00297 . . . . . . . . Chy02g02614 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00426 Lsi_Chr02 FPKM 34.509869 39.920155 177.591248 167.229355 26.302486 24.333986 24.05397 56.60252 60.152287 66.909027