Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00427 ATGGCTAGAGAAATAATGAAGACCCATGACCTTAAATTCTCCAATAGGCCTCAAACCACAGCAGGAAAGCACTTGCTCTATGGATGCCAAGACATGGCTTTTTCTCAATATGGAGAGTATTGGAGACAAGCCAAAAAAATGTGTGTTCTTGAGCTTTTAAGTGCCAAAAGGGTGGAGTCATTTCAATATGTGAGAGATGAGGAAGTTGGTTTGCTTATTGATAGGATTCGTAAAAGTTGTGATGTTGTTTGTGGGGACGAGTGTGTGAATCTTAAACAGATGTTCATGTCAACCTCGAACAATATAATATCGAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGTGGAAGCGACACAACCGCAGCGAGTTTGGAATGGGCAATGACAGAGCTGATGAGAAACCCTGCAGCCATGAAGAAAATCCAAGAAGAGATCAGAACAATAGTTGGAAATAAGCCAAAGATTGAAATGGAGGATATCCAAAAGATGAAGTACATGCAGTATGTGATAAAAGAAACTCTGAGATTACATCCGCCAGCTCCTTTCTTAGTGCCTCGAGAATCGATGGAAGATGTTGAGATTGAAGGCTACCACATTTCATCAAAAACCAGAGTTTTTGTGAATGTTTGGGCAATTCAAAGGGGCCCCATGACTTGGGAAAAGCCAAACGAGTTCAACCCAGAGAGATTCATAGGGAATTCAATTAATTACAAAGGTCATGACTTTGAGTTAACTCCATTTGGGAGTGGGAGAAGAAAGTGTGCTGGATTATCGTTTGGAATTGCTTCCTTTGAGTTTGCATTGGCAAATGTTCTTTACTGGTTTGATTGGAAGCTTCCTGATGGCTCTGTTTTGGATGTTGAAGAAGAAAATGGACTCACTATTTGCAAGAAAATCCCCCTGCATCTCAAGCCAGTACCATATGTATCTAGGGCCCTGCCCCACCAATCTCTAGCAGATCTTTCCAAGAAATATGGGCCTCTCATGTTCTTAAAGCTGGGCCAGGCCCCAACTCTAGTGGTTTCATCACCAAAAATGGCTAGAGAAGTAATGAAAACCCATGACCTTAAATTCTCCAATAGGCCTCAAACCACAGCTGGAAAGTTCTTGCTCTATGGATGCCAAGACATGGCTTTTTCTCAATATGGAGAGATTCGTAAAGGCTCCGACATCGTTTGTGGGGATGAGTGTGTGAATCTTAAACAGATGTTTGGGTCAACCTCGACCAATATAATATCGAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGGAATGATAGATTTGGAGATGTGTCTAGGAAGATTTTGGTATTAATTGCAGCGTTTTGTGTTGGGGATTTTTTCCCTGCTTTTGGATGGGTTGATGTAGTTAGAGGGTTCATTAGGGAACTAAAAACAACCTCTAGAATATTGGATGGCTTCTTCGATAAGGTCATTGAAGAACACAAGACAAAGATGAGTGTTGCCATGAAGAAAGTCCAAGAAGAGATCAGAACAATAGTTGGAAAGAAGCCAAGGATTGAAATGGAAGATATTGAAAAGACAAAGTACATGCACTATGTGATAAAAGAAACTCTGATATTACATCCACCGGCTCCTGTCTTAGTGCCTCGAGAATCAGTGGGAGATGTTGAGATTGAAGGCTACCACATTCCATCAAAAAGCAGTGTTTTTGTGAATGTTTGGGCAATTCAAAGGGACCCCATGATTTGGGAAAAAGCCAAACGAGTTCGTCCCGGAGAGATTCATAGAAAATTCAATTGA 1776 40.93 MAREIMKTHDLKFSNRPQTTAGKHLLYGCQDMAFSQYGEYWRQAKKMCVLELLSAKRVESFQYVRDEEVGLLIDRIRKSCDVVCGDECVNLKQMFMSTSNNIISRCVLGEKFEDENGGSDTTAASLEWAMTELMRNPAAMKKIQEEIRTIVGNKPKIEMEDIQKMKYMQYVIKETLRLHPPAPFLVPRESMEDVEIEGYHISSKTRVFVNVWAIQRGPMTWEKPNEFNPERFIGNSINYKGHDFELTPFGSGRRKCAGLSFGIASFEFALANVLYWFDWKLPDGSVLDVEEENGLTICKKIPLHLKPVPYVSRALPHQSLADLSKKYGPLMFLKLGQAPTLVVSSPKMAREVMKTHDLKFSNRPQTTAGKFLLYGCQDMAFSQYGEIRKGSDIVCGDECVNLKQMFGSTSTNIISRCVLGEKFEDENGNDRFGDVSRKILVLIAAFCVGDFFPAFGWVDVVRGFIRELKTTSRILDGFFDKVIEEHKTKMSVAMKKVQEEIRTIVGKKPRIEMEDIEKTKYMHYVIKETLILHPPAPVLVPRESVGDVEIEGYHIPSKSSVFVNVWAIQRDPMIWEKAKRVRPGEIHRKFN 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3522958 3526699 - Lsi02G004270.1 Lsi02g00427 655169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00427 591 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 249 258 IPR017972 GO:0005506|GO:0016705
Lsi02g00427 591 PRINTS E-class P450 group IV signature 240 256 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PRINTS E-class P450 group IV signature 165 181 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PRINTS E-class P450 group IV signature 256 274 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PRINTS E-class P450 group IV signature 215 233 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PANTHER CYTOCHROME P450 71B11-RELATED 314 389 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 71B11-RELATED 117 309 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 71B11-RELATED 491 581 - -
Lsi02g00427 591 Gene3D Cytochrome P450 1 117 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Gene3D Cytochrome P450 303 492 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PRINTS P450 superfamily signature 247 256 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PRINTS P450 superfamily signature 117 134 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PRINTS P450 superfamily signature 170 181 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 SUPERFAMILY Cytochrome P450 1 309 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Gene3D Cytochrome P450 493 586 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Gene3D Cytochrome P450 118 302 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 117 309 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 314 389 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 71B11-RELATED 395 489 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 71B11-RELATED 1 116 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 491 581 - -
Lsi02g00427 591 SUPERFAMILY Cytochrome P450 312 583 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Pfam Cytochrome P450 494 583 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Pfam Cytochrome P450 2 113 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Pfam Cytochrome P450 313 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 Pfam Cytochrome P450 117 297 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00427 591 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 395 489 - -
Lsi02g00427 591 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 1 116 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00427 Lsi-Chr2:3522958 Lsi02g00430 Lsi-Chr2:3558876 1.16E-47 dispersed
Lsi02g00426 Lsi-Chr2:3517047 Lsi02g00427 Lsi-Chr2:3522958 3.16E-37 tandem
Lsi02g00427 Lsi-Chr2:3522958 Lsi02g00428 Lsi-Chr2:3544134 2.28E-32 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00427 - K20617 bvg:104908581 391.349