Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lsi02g00427 | ATGGCTAGAGAAATAATGAAGACCCATGACCTTAAATTCTCCAATAGGCCTCAAACCACAGCAGGAAAGCACTTGCTCTATGGATGCCAAGACATGGCTTTTTCTCAATATGGAGAGTATTGGAGACAAGCCAAAAAAATGTGTGTTCTTGAGCTTTTAAGTGCCAAAAGGGTGGAGTCATTTCAATATGTGAGAGATGAGGAAGTTGGTTTGCTTATTGATAGGATTCGTAAAAGTTGTGATGTTGTTTGTGGGGACGAGTGTGTGAATCTTAAACAGATGTTCATGTCAACCTCGAACAATATAATATCGAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGTGGAAGCGACACAACCGCAGCGAGTTTGGAATGGGCAATGACAGAGCTGATGAGAAACCCTGCAGCCATGAAGAAAATCCAAGAAGAGATCAGAACAATAGTTGGAAATAAGCCAAAGATTGAAATGGAGGATATCCAAAAGATGAAGTACATGCAGTATGTGATAAAAGAAACTCTGAGATTACATCCGCCAGCTCCTTTCTTAGTGCCTCGAGAATCGATGGAAGATGTTGAGATTGAAGGCTACCACATTTCATCAAAAACCAGAGTTTTTGTGAATGTTTGGGCAATTCAAAGGGGCCCCATGACTTGGGAAAAGCCAAACGAGTTCAACCCAGAGAGATTCATAGGGAATTCAATTAATTACAAAGGTCATGACTTTGAGTTAACTCCATTTGGGAGTGGGAGAAGAAAGTGTGCTGGATTATCGTTTGGAATTGCTTCCTTTGAGTTTGCATTGGCAAATGTTCTTTACTGGTTTGATTGGAAGCTTCCTGATGGCTCTGTTTTGGATGTTGAAGAAGAAAATGGACTCACTATTTGCAAGAAAATCCCCCTGCATCTCAAGCCAGTACCATATGTATCTAGGGCCCTGCCCCACCAATCTCTAGCAGATCTTTCCAAGAAATATGGGCCTCTCATGTTCTTAAAGCTGGGCCAGGCCCCAACTCTAGTGGTTTCATCACCAAAAATGGCTAGAGAAGTAATGAAAACCCATGACCTTAAATTCTCCAATAGGCCTCAAACCACAGCTGGAAAGTTCTTGCTCTATGGATGCCAAGACATGGCTTTTTCTCAATATGGAGAGATTCGTAAAGGCTCCGACATCGTTTGTGGGGATGAGTGTGTGAATCTTAAACAGATGTTTGGGTCAACCTCGACCAATATAATATCGAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGGAATGATAGATTTGGAGATGTGTCTAGGAAGATTTTGGTATTAATTGCAGCGTTTTGTGTTGGGGATTTTTTCCCTGCTTTTGGATGGGTTGATGTAGTTAGAGGGTTCATTAGGGAACTAAAAACAACCTCTAGAATATTGGATGGCTTCTTCGATAAGGTCATTGAAGAACACAAGACAAAGATGAGTGTTGCCATGAAGAAAGTCCAAGAAGAGATCAGAACAATAGTTGGAAAGAAGCCAAGGATTGAAATGGAAGATATTGAAAAGACAAAGTACATGCACTATGTGATAAAAGAAACTCTGATATTACATCCACCGGCTCCTGTCTTAGTGCCTCGAGAATCAGTGGGAGATGTTGAGATTGAAGGCTACCACATTCCATCAAAAAGCAGTGTTTTTGTGAATGTTTGGGCAATTCAAAGGGACCCCATGATTTGGGAAAAAGCCAAACGAGTTCGTCCCGGAGAGATTCATAGAAAATTCAATTGA | 1776 | 40.93 | MAREIMKTHDLKFSNRPQTTAGKHLLYGCQDMAFSQYGEYWRQAKKMCVLELLSAKRVESFQYVRDEEVGLLIDRIRKSCDVVCGDECVNLKQMFMSTSNNIISRCVLGEKFEDENGGSDTTAASLEWAMTELMRNPAAMKKIQEEIRTIVGNKPKIEMEDIQKMKYMQYVIKETLRLHPPAPFLVPRESMEDVEIEGYHISSKTRVFVNVWAIQRGPMTWEKPNEFNPERFIGNSINYKGHDFELTPFGSGRRKCAGLSFGIASFEFALANVLYWFDWKLPDGSVLDVEEENGLTICKKIPLHLKPVPYVSRALPHQSLADLSKKYGPLMFLKLGQAPTLVVSSPKMAREVMKTHDLKFSNRPQTTAGKFLLYGCQDMAFSQYGEIRKGSDIVCGDECVNLKQMFGSTSTNIISRCVLGEKFEDENGNDRFGDVSRKILVLIAAFCVGDFFPAFGWVDVVRGFIRELKTTSRILDGFFDKVIEEHKTKMSVAMKKVQEEIRTIVGKKPRIEMEDIEKTKYMHYVIKETLILHPPAPVLVPRESVGDVEIEGYHIPSKSSVFVNVWAIQRDPMIWEKAKRVRPGEIHRKFN | 591 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 3522958 | 3526699 | - | Lsi02G004270.1 | Lsi02g00427 | 655169 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lsi02g00427 | 591 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 249 | 258 | IPR017972 | GO:0005506|GO:0016705 | |
Lsi02g00427 | 591 | PRINTS | E-class P450 group IV signature | 240 | 256 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PRINTS | E-class P450 group IV signature | 165 | 181 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PRINTS | E-class P450 group IV signature | 256 | 274 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PRINTS | E-class P450 group IV signature | 215 | 233 | IPR002403 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 71B11-RELATED | 314 | 389 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 71B11-RELATED | 117 | 309 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 71B11-RELATED | 491 | 581 | - | - | |
Lsi02g00427 | 591 | Gene3D | Cytochrome P450 | 1 | 117 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Gene3D | Cytochrome P450 | 303 | 492 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PRINTS | P450 superfamily signature | 247 | 256 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PRINTS | P450 superfamily signature | 117 | 134 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PRINTS | P450 superfamily signature | 170 | 181 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | SUPERFAMILY | Cytochrome P450 | 1 | 309 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Gene3D | Cytochrome P450 | 493 | 586 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Gene3D | Cytochrome P450 | 118 | 302 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 FAMILY 71 PROTEIN | 117 | 309 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 FAMILY 71 PROTEIN | 314 | 389 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 71B11-RELATED | 395 | 489 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 71B11-RELATED | 1 | 116 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 FAMILY 71 PROTEIN | 491 | 581 | - | - | |
Lsi02g00427 | 591 | SUPERFAMILY | Cytochrome P450 | 312 | 583 | IPR036396 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Pfam | Cytochrome P450 | 494 | 583 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Pfam | Cytochrome P450 | 2 | 113 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Pfam | Cytochrome P450 | 313 | 382 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | Pfam | Cytochrome P450 | 117 | 297 | IPR001128 | GO:0004497|GO:0005506|GO:0016705|GO:0020037 | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 FAMILY 71 PROTEIN | 395 | 489 | - | - | |
Lsi02g00427 | 591 | PANTHER | CYTOCHROME P450 FAMILY 71 PROTEIN | 1 | 116 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lsi02g00427 | Lsi-Chr2:3522958 | Lsi02g00430 | Lsi-Chr2:3558876 | 1.16E-47 | dispersed | |
Lsi02g00426 | Lsi-Chr2:3517047 | Lsi02g00427 | Lsi-Chr2:3522958 | 3.16E-37 | tandem | |
Lsi02g00427 | Lsi-Chr2:3522958 | Lsi02g00428 | Lsi-Chr2:3544134 | 2.28E-32 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lsi02g00427 | - | K20617 | bvg:104908581 | 391.349 |