Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00430 ATGGAGCTGTTCTTCTTCAAACCCAAAACCCCCAACTTCCCTCCTTCACCTCCAAAGCTTCCCCTTATTGGCAACCTTCATCAATTAGGTGCCTTACCACACCAATCCATGGCAGCTCTTTCCAAAAAACATGGCCCTTTAATGTTCCTCAAGCTAGGCCAAGCTCCGGCCCTTGTAATTTCCTCAGCCAAAATGGCTGAACAAGTCATGAAAATCCATGACATCAAATTCTCCAACAGAATCCAAACTACCGCCGCAAGAATGTTGCTTTATGGATGTCAAGACGTGGCTTTTGCCTCATATGGTGAGTATTGGAGACAAGCAAGAAAAATCTGTGCTCTTGAGCTTTTTAGTGCCAAAAGAGTTGAGTCTTTTCAGTTTGTTAGAGATGAAGAAATTGATGTTCTTATTAATAGGATTCGCAAGTGTTGTATTAATAATGGTGGGAGTGAAGAGGGTCATGTGGATCTTGGACATTTGTTTTTTCAAACCTCAAATGATATTGTTTCAAGATGTGTTTTGGGAGAGAAATTTGAGGATGAAAATGGTGAGAGTAGATTTGGGGAGATATCGAGGAGAACTATGGTGTTACTTACAGCGTTTTGTTTTGGGGATTTCTTCCCTTCATTTGGATGGATTCTTGATGCGATTAGAGGTAAGGTGGTTGAAGAACATAAGGAAAAGATTATTAGGGCAGGTGGGATTGATATTCATGATGAATCTAGAAAGGATTTTGTGGATATTATGCTACAACTTCAACAAGATGGAATGATTGACTATCATTTCTCATTTGACAACCTCAAAGCCATCGTTTTGGACATGTTTGTGGGTGGAAGTGACACAACAGCAACAGGATTGGAATGGACAATGGCAGAGCTGATGAGAAAGCCCATAATCATGAAGAAAGTCCAAGAAGAGATTAGAACAATAATTGGGAAGAAGTCAAAGATAGAAGCAGAAGACATTCAAAAAATGGAGTACATGCAGTGTATCATTAAAGAATCTCTAAGACTTCACCCACCCGTTCCTCTTTTAGTACCACGAGAAACAACAACGAACGTAGAGATTGAAGGTTACCATATTCCATCAAAAACAAGAGTATTTGTAAATGTTTGGGCCATTCAAAGAGACCCTCAATCTTGGGATAATCCAAATGAGTTCATTCCAGAGAGATTTATGGACAAAAATAATTCAGCTGATTACAAAGGCCAACACTTTGAGTTCATTCCATTTGGAAGTGGGAGAAGGAAGTGCCCTGGTTTGTCATTTGGGATTGCTTCTTTTGAATTTGCTTTGGCTAATCTTCTCTATTGGTTTGATTGGAAGCTTCCTATTGGCTGTGAATCATTGGATATAGAAGAAGCAAATGGACTCACTGTTTGCAAGAAAATTCCTCTCCTTCTCAACCCTATTCCTTATGTTGTCTAA 1428 39.43 MELFFFKPKTPNFPPSPPKLPLIGNLHQLGALPHQSMAALSKKHGPLMFLKLGQAPALVISSAKMAEQVMKIHDIKFSNRIQTTAARMLLYGCQDVAFASYGEYWRQARKICALELFSAKRVESFQFVRDEEIDVLINRIRKCCINNGGSEEGHVDLGHLFFQTSNDIVSRCVLGEKFEDENGESRFGEISRRTMVLLTAFCFGDFFPSFGWILDAIRGKVVEEHKEKIIRAGGIDIHDESRKDFVDIMLQLQQDGMIDYHFSFDNLKAIVLDMFVGGSDTTATGLEWTMAELMRKPIIMKKVQEEIRTIIGKKSKIEAEDIQKMEYMQCIIKESLRLHPPVPLLVPRETTTNVEIEGYHIPSKTRVFVNVWAIQRDPQSWDNPNEFIPERFMDKNNSADYKGQHFEFIPFGSGRRKCPGLSFGIASFEFALANLLYWFDWKLPIGCESLDIEEANGLTVCKKIPLLLNPIPYVV 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3558876 3563830 - Lsi02G004300.1 Lsi02g00430 655172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00430 475 PRINTS P450 superfamily signature 277 294 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS P450 superfamily signature 330 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS P450 superfamily signature 409 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PANTHER CYTOCHROME P450 71B11-RELATED 6 472 - -
Lsi02g00430 475 Pfam Cytochrome P450 14 459 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 266 283 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 329 347 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 41 60 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 418 441 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 286 312 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 164 182 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 370 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PRINTS E-class P450 group I signature 408 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 411 420 IPR017972 GO:0005506|GO:0016705
Lsi02g00430 475 Gene3D Cytochrome P450 6 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00430 475 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 6 472 - -
Lsi02g00430 475 Coils Coil 300 320 - -
Lsi02g00430 475 SUPERFAMILY Cytochrome P450 14 471 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00430 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207136 762.296
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00427 Lsi-Chr2:3522958 Lsi02g00430 Lsi-Chr2:3558876 1.16E-47 dispersed
Lsi02g00428 Lsi-Chr2:3544134 Lsi02g00430 Lsi-Chr2:3558876 0 dispersed
Lsi02g00430 Lsi-Chr2:3558876 Lsi02g00433 Lsi-Chr2:3583461 0 dispersed
Lsi02g00430 Lsi-Chr2:3558876 Lsi02g00431 Lsi-Chr2:3566922 2.41E-55 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g856 . . . . . . . . . Cmo18g00169 . Cma11g00063 . . . . . Bhi02g00595 . . . . . . . . . . . . . . . . Cone19ag0174 Lsi02g00430 Csa01g00908 Chy12g01221 Cme12g01644 Blo13g00162 . . . . . . . . . Cmo11g00066 . . . . . . Bhi08g01677 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00430 Lsi_Chr02 FPKM 15.67986 16.868168 15.195436 16.426186 15.633154 12.364875 15.13375 23.982853 22.816759 26.050255