Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00436 ATGACACCATCTTCTCAAACAGAGCCCAAAAACACAGCTGCAAAATCCTTACTCTATGGATGCCGTGATGTGGCCTTTGCTTCCTATGGAGAACAGTGGAGAGAGGCCAGAAAATTATGTGTTATGGAGCTCTTTAGCGCCAAAAAAGTTGAGTCTTTCCAACATATTAGAGATGAAGAAGTTGCAAAGCTTGTGAAAAAGATTGAAAATAAGGATTATTCATCGTGTGTGATTAATCTCAACGAGCTTTTGATGGCAACTTCAAATAATATAGTGGGGAGATGCGTTTTGGGAGAGACGTTTGAGGATGAAAATGATGGGTTTGGAGAAGTGACGAGGAAGGTAATGGTGTTGTTGTCGGGGTTTTGTGTTGGGGATGCTTTTCCTTGGTTAGGATGGATTGATGTGTTGAGAGGATTTCATGGACAACTCAAAACCACTTTTCAAGCATTGGATAGGCTTTTTGAGAAAGTGATTCAAGAACATATGGAAAAAATGAAGAGTGGTGATGATAATGCATCTTGTGAGAAGGATTTTGTGGGGATTATTCTAAAGTTCCAACAACAAAACAGTCTTGATTATCGTTTCACTATGGAAGATTTCATAGCAATTTTACTGGATTCTGATCTTGATATGTTTGTAGGTGGAACCGACACAACAGCAATAAGTTTGGAATGGACAATGACAGAGCTGATGAGAAACCCAACAGCCATGAAAAAAGTTCAAGAAGAGGTCAGAGAAATAGTTGGAAAAAAGAAAAAGATTGAAGCAAAAGACACTCAAAAAATGGAGTACATGAAATGTGTTATAAAAGAATCTCTAAGACTCCACCCACCAGGTCCTCTTCTGGTGCCAAGAGAAACAATAGAAAGTGTCAACCTTGCAGGCTACCAAATTCCATCAAAAACCAGAGTTTGGATTAATGCTTGGACAATTCAAAGAGACCCCAAAATCTGGGAAAGGCCAAATCAGTTCATTCCAGAGAGATTCATGAAGGAAAATAAATCAGTTGATTTCAAAGGCCATGACTTTGAGTTCATTCCATTTGGGAGTGGAAGAAGAAAGTGCATTGCAATGTCATTTGCAATTGCTGTTTTTGAATATGTATTGGCCAATCTTCTTTATTGGTTTGATTGGAAGCTTCCAAATGGGGAGTTGTTGGATATGACTGAACAACATGGCCTCTTGGTTTCCAAGAAACTTCCACTCAATCTTATCCCAATTCCATATTCTCTGTAA 1239 38.66 MTPSSQTEPKNTAAKSLLYGCRDVAFASYGEQWREARKLCVMELFSAKKVESFQHIRDEEVAKLVKKIENKDYSSCVINLNELLMATSNNIVGRCVLGETFEDENDGFGEVTRKVMVLLSGFCVGDAFPWLGWIDVLRGFHGQLKTTFQALDRLFEKVIQEHMEKMKSGDDNASCEKDFVGIILKFQQQNSLDYRFTMEDFIAILLDSDLDMFVGGTDTTAISLEWTMTELMRNPTAMKKVQEEVREIVGKKKKIEAKDTQKMEYMKCVIKESLRLHPPGPLLVPRETIESVNLAGYQIPSKTRVWINAWTIQRDPKIWERPNQFIPERFMKENKSVDFKGHDFEFIPFGSGRRKCIAMSFAIAVFEYVLANLLYWFDWKLPNGELLDMTEQHGLLVSKKLPLNLIPIPYSL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3616233 3620751 - Lsi02G004360.1 Lsi02g00436 655178

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00436 412 Coils Coil 238 258 - -
Lsi02g00436 412 Pfam Cytochrome P450 16 400 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 Gene3D Cytochrome P450 3 405 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 267 285 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 224 250 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 346 356 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 308 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 356 379 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 204 221 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS E-class P450 group I signature 87 105 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 8 409 - -
Lsi02g00436 412 PANTHER CYTOCHROME P450 71B11-RELATED 8 409 - -
Lsi02g00436 412 SUPERFAMILY Cytochrome P450 11 409 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 349 358 IPR017972 GO:0005506|GO:0016705
Lsi02g00436 412 PRINTS P450 superfamily signature 347 356 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS P450 superfamily signature 268 279 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Lsi02g00436 412 PRINTS P450 superfamily signature 215 232 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00436 K20617 CYP71A; cytochrome P450 family 71 subfamily A - csv:101207378 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00434 Lsi-Chr2:3594737 Lsi02g00436 Lsi-Chr2:3616233 1.18E-156 dispersed
Lsi02g00436 Lsi-Chr2:3616233 Lsi06g01591 Lsi-Chr6:26302596 6.54E-118 dispersed
Lsi02g00435 Lsi-Chr2:3605524 Lsi02g00436 Lsi-Chr2:3616233 1.49E-83 tandem
Lsi02g00436 Lsi-Chr2:3616233 Lsi02g00437 Lsi-Chr2:3632545 0 tandem
Lsi02g00436 Lsi-Chr2:3616233 Lsi04g00624 Lsi-Chr4:5708822 9.42E-112 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g861 . . Bda06g00623 Bda15g00532 . . . Bma12g01061 . Cmo18g00175 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0183 . Lsi02g00436 Csa01g00909 Chy12g01217 Cme12g01643 Blo13g00154 Blo15g00245 . . . . . . . . . . . . . . . Bhi08g01683 . . . Hepe07g2179 . . Cla03g00302 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000106 14 8 5 4 4 8 0 8 5 13 4 7 6 8 6 16 5 16 1 6 10 8 6 12 5 13 10 7 10 3 228
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00436 Lsi_Chr02 FPKM 8.604357 10.855843 18.334816 18.207066 27.70682 25.913006 28.462587 25.232533 24.921604 27.394314