Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00455 ATGGAATCCACTCCTCTCACCACCTCCGTCCCTCCCACCGCCCTTCCCGACGACCTCTACTGCCATTTCCCGGCCACTGTTGCCTCCGATGACTCCGCCGCCTCCACCATTACGCCGTCTATATTCAGGGAACTTCCAGAACCCGATGTCCATATCCTCGCCTCTGGCGGACTCCGAATCCCCGCCCATTCCGGCATCCTGGCTTCGATTTCGCCGGTCCTTGAACATGTAATTGATCGGCCGCGGAAGAAGCGAAACGCCGAGAAAATGATTTCGATCCTTGGAGTTCCCTCAGATGCCGTCGTTGCGTTCGTTCGGTTCCTCTACAGTTCTAGGTGCACGGCGGAGCATCTTGAGAAGCACGGAATTCATCTACTGGCTCTGTCGCATGTCTACATGGTGCCGCAATTAAAGGCGATGTGTACGAAAGATTTGGCTCAACGGCTTACGATTGAAAGCGTTGTTGACGTTTTGCAACTCGCGAGGCTCTGCAACGCGCCAGATCTTTACCTCAAGTGTATGAAATTCGTCGCTGATCATTTTAAATTCATTGAGAAAACTGAAGGATGGAAGTTTATTCAAGATCACGATCCTTGGCTTGAGCTTGATATTCTTCAGTTCATCGACGAGACCGAATCGGTAAACACCATTTTCCTTATGATTATCATTCTTTTCTGTGCTTTATTCGATAGATCGATGAAATATTGGCGAAATTTGCAATAG 723 49.38 MESTPLTTSVPPTALPDDLYCHFPATVASDDSAASTITPSIFRELPEPDVHILASGGLRIPAHSGILASISPVLEHVIDRPRKKRNAEKMISILGVPSDAVVAFVRFLYSSRCTAEHLEKHGIHLLALSHVYMVPQLKAMCTKDLAQRLTIESVVDVLQLARLCNAPDLYLKCMKFVADHFKFIEKTEGWKFIQDHDPWLELDILQFIDETESVNTIFLMIIILFCALFDRSMKYWRNLQ 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3802559 3805654 - Lsi02G004550.1 Lsi02g00455 655197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00455 240 SUPERFAMILY POZ domain 49 177 IPR011333 -
Lsi02g00455 240 SMART BTB_4 48 149 IPR000210 GO:0005515
Lsi02g00455 240 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 35 213 IPR044513 -
Lsi02g00455 240 Pfam BTB/POZ domain 48 148 IPR000210 GO:0005515
Lsi02g00455 240 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 2 35 213 - -
Lsi02g00455 240 CDD BACK 150 191 - -
Lsi02g00455 240 ProSiteProfiles BTB domain profile. 48 117 IPR000210 GO:0005515
Lsi02g00455 240 Gene3D Potassium Channel Kv1.1; Chain A 40 146 IPR011333 -
Lsi02g00455 240 Gene3D - 148 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00455 - - - csv:101209491 402.905
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi02g00049 Lsi-Chr2:460012 Lsi02g00455 Lsi-Chr2:3802559 4.22E-87 dispersed
Lsi02g00455 Lsi-Chr2:3802559 Lsi02g01794 Lsi-Chr2:23747444 8.53E-10 dispersed
Lsi02g00455 Lsi-Chr2:3802559 Lsi05g01464 Lsi-Chr5:22494107 2.17E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g876 . . Bda06g00628 Bda15g00529 Bpe12g00680 . Bma06g00237 Bma12g01066 Cmo13g00798 Cmo18g00179 . . . . . Cpe20g00340 . . . . . . . . . . . . . . . . . Cone13ag0191 Cone19ag0186 Lsi02g00455 Csa01g00912 Chy12g01212 Cme12g02054 . Blo15g00240 Bda11g01631 . Bpe07g00869 . . Bma08g00073 Sed08g2470 . . Cma13g00769 Cma18g00203 Car13g00983 Car18g00197 Cpe09g00993 . Bhi08g01684 Tan05g2884 Cmetu12g0322 Lac10g0529 Hepe07g2171 . . Cla03g00313 Cam03g0332 Cec03g0323 Cco03g0336 Clacu03g0333 Cmu03g0939 Cre03g0633 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001511 3 2 1 3 2 2 4 2 2 2 2 2 3 2 2 5 2 2 4 2 2 2 2 2 2 2 2 5 3 1 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
24758 PF00651 BTB 2.00E-11 CL0033 Lsi TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Lsi02g00455 Lsi_Chr02 FPKM 3.495671 4.399058 3.867464 4.726646 6.66636 6.065587 7.563572 4.227724 4.633828 6.630726