Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lsi02g00456 ATGGCACCGCCTACAGTCCCTCTCTCTCTCCTCTTCCTCTTTCTCTTCTCCGTCTCTCTCTCCGCCGCTCTCACCGCCGCTCCTGCGGCCGTTCCCAACCCCGAACTCGTCGTACAAGAAGTACACAGGAGCATAGTCAATGCGACGAAGAGGAGGAATTTAGGGTATCTCTCATGTGGGACTGGAAATCCAATCGACGATTGCTGGCGGTGCGACCCCAATTGGGAGAAAAATCGTCAGAGACTAGCTGACTGTGGGATTGGATTCGGTAAAAACGCCATTGGCGGTCGCGACGGCCAAATCTACGTCGTCACTGACGCCGGCGACGACGATCCAGTCAACCCTAAACCAGGAACTCTCCGTTACGCAGTAATCCAAGACGAACCCCTCTGGATTATCTTCGCTCGCGATATGGTGATTAGATTGAAAGAAGAACTGATTATGAATTCCTTCAAAACCATCGACGGCCGTGGCGCTAGTGTCCATATCGCCGGTGGGCCTTGCATTACGATTCAGTACGTGACGAACATTATAATCCACGGTCTCAACATTCACGACTGTAAACCAGGGGGAAACACAGACGTGAGAGATTCCCCTCGACATTTCGGATTCAGAACCATATCGGACGGCGACGGCGTTTCAATCTTCGGCGGCAGCCATGTTTGGGTTGATCACTGCTCTTTATCGAACTGTAACGATGGATTAATCGACGCCATTCACGGGTCTACAGCGATTACGATTTCAAACAATTACATGACGCATCATGATAAAGTGATGTTGTTGGGGCACAGTGATTCGTACACTCAAGACAAGAATATGCAAGTCACCATTGCTTTCAACCATTTTGGTGAAGGTCTTGTTCAAAGAATGCCCAGATGCAGACATGGGTATTTTCATGTGGTGAATAATGACTATACGCATTGGGAAATGTACGCCATTGGAGGAAGTGCTGCTCCAACTATCAACAGTCAAGGAAACAGATTTGTTGCACCAAATGACAGATTCAGCAAAGAGGTGACAAAATACGAGGATGCACCAGAGAGTGAGTGGAAGAATTGGCATTGGAGATCAGAAGGGGATCTGATGCTAAACGGTGCGTTTTTCACTGCCTCCGGCGCCGGAGCATCGTCCAGTTACGCTAGAGCATCGAGCTTAGGGGCGAGACCGTCGTCGCTCGTCGGTACGATTACGACCAACGCGGGTGCACTGAACTGCAGAAAGGGCTCCCGCTGCTGA 1236 50.24 MAPPTVPLSLLFLFLFSVSLSAALTAAPAAVPNPELVVQEVHRSIVNATKRRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCGIGFGKNAIGGRDGQIYVVTDAGDDDPVNPKPGTLRYAVIQDEPLWIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKPGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVAPNDRFSKEVTKYEDAPESEWKNWHWRSEGDLMLNGAFFTASGAGASSSYARASSLGARPSSLVGTITTNAGALNCRKGSRC 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3822873 3826272 - Lsi02G004560.1 Lsi02g00456 655198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lsi02g00456 411 Gene3D - 62 404 IPR012334 -
Lsi02g00456 411 PANTHER PECTATE LYASE 11 408 - -
Lsi02g00456 411 SMART amb_all 137 334 IPR002022 -
Lsi02g00456 411 Pfam Pectate lyase 147 328 IPR002022 -
Lsi02g00456 411 SUPERFAMILY Pectin lyase-like 38 406 IPR011050 -
Lsi02g00456 411 PANTHER PECTATE LYASE 18-RELATED 11 408 IPR045032 GO:0030570
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 85 102 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 382 405 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 353 377 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Lsi02g00456 411 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lsi01g00449 Lsi-Chr1:3750366 Lsi02g00456 Lsi-Chr2:3822873 5.09E-126 dispersed
Lsi01g01298 Lsi-Chr1:11251835 Lsi02g00456 Lsi-Chr2:3822873 1.57E-124 dispersed
Lsi02g00456 Lsi-Chr2:3822873 Lsi02g01614 Lsi-Chr2:22008013 0 dispersed
Lsi02g00573 Lsi-Chr2:5129704 Lsi02g00456 Lsi-Chr2:3822873 2.76E-148 dispersed
Lsi02g00456 Lsi-Chr2:3822873 Lsi05g01813 Lsi-Chr5:25363141 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lsi02g00456 K01728 - csv:101209736 778.089